CF832896

Overview
NameCF832896
Unique NameCF832896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8853 contig Csv1_Contig8853:2..437. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832896 vs. ExPASy Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.184e-17
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = -1 
Query:  261 TAFGGFKSRSQVPWLVDKSMKKEIKVEESVSPNMTLGEIFEAFRYMHGGDCLRCVLQMQ 437
            TAFGGFKSR+QVPWLVDK MKKEIKV+E ++ NM L +I +AF  +H G CLRCVL MQ
Sbjct:  322 TAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLADINDAFHLLHEGGCLRCVLAMQ 380
[Close]
BLAST of CF832896 vs. ExPASy Swiss-Prot
Match: ADHX_PEA (Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.003e-16
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = -1 
Query:  258 TAFGGFKSRSQVPWLVDKSMKKEIKVEESVSPNMTLGEIFEAFRYMHGGDCLRCVLQMQD 437
            TAFGGFKSRSQVPWLV+K +KKEIKV+E ++ N+TL EI +AF  +H G CLRCVL + D
Sbjct:  319 TAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLLEINKAFDLLHEGQCLRCVLAVHD 378
[Close]
BLAST of CF832896 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = -1 
Query:  270 TAFGGFKSRSQVPWLVDKSMKKEIKVEESVSPNMTLGEIFEAFRYMHGGDCLRCVL 437
            TAFGGFKSR+QVPWLV+K M KEIKV+E ++ N+TLGEI +AF  +H G CLRCVL
Sbjct:  320 TAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVL 375
[Close]
BLAST of CF832896 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.601e-14
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = -1 
Query:  270 TAFGGFKSRSQVPWLVDKSMKKEIKVEESVSPNMTLGEIFEAFRYMHGGDCLRCVL 437
            TAFGGFKSRSQVPWLV+K + KEIKV+E V+ +M L +I +AF  +H G CLRCVL
Sbjct:  322 TAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKAFDLLHEGGCLRCVL 377
[Close]
BLAST of CF832896 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.601e-14
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = -1 
Query:  270 TAFGGFKSRSQVPWLVDKSMKKEIKVEESVSPNMTLGEIFEAFRYMHGGDCLRCVL 437
            TAFGGFKSRSQVPWLV+K + KEIKV+E V+ +M L +I +AF  +H G CLRCVL
Sbjct:  322 TAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKAFDLLHEGGCLRCVL 377
The following BLAST results are available for this feature:
BLAST of CF832896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ADHX_MAIZE1.184e-1769.49Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH P... [more]
ADHX_PEA1.003e-1666.67Alcohol dehydrogenase class-3 OS=Pisum sativum PE=... [more]
ADHX_ARATH1.710e-1669.64Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
ADHX_ORYSJ1.601e-1466.07Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ORYSI1.601e-1466.07Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02K03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832896 ID=CF832896; Name=CF832896; organism=Citrus sinensis; type=EST; length=437bp
CTGAAAGCTACTGGGCCAGCAGATAGATCATACTTCATAAACAACACATT
TATTATTGTGATGCAAGTCCTTAGCAATATGACTGCTTAATAAAGTTGAA
TAGAAACTTTTTTGCTGCCACACCTGCCAAACTATCTCACATTAGAGTAG
TTTTCTTCACACACTCACAGTTTGCACATAAAAGGATGCAATTACCATGT
AAACACCAAAATATACCATTTCATAAGAACTAGTGCAGGGATCAATAGAT
CCTCTCAATCCTGCATTTGAAGCACACAGCGCAGGCAGTCCCCTCCATGC
ATATAACGGAATGCCTCGAAGATCTCCCCAAGAGTCATATTGGGAGATAC
GGACTCCTCAACCTTAATTTCCTTCTTCATGGACTTGTCTACAAGCCAAG
GCACTTGTGAACGGCTCTTGAAACCACCAAAAGCTGT
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