CF832897

Overview
NameCF832897
Unique NameCF832897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8853 contig Csv1_Contig8853:36..501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832897 vs. ExPASy Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.732e-13
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 3 
Query:    9 LVDKYMKKEIKVDDYITHNMTLGEINQAFRYMHGGDCLHCVLKMQ 143
            LVDKYMKKEIKVD+YITHNM L +IN AF  +H G CL CVL MQ
Sbjct:  336 LVDKYMKKEIKVDEYITHNMNLADINDAFHLLHEGGCLRCVLAMQ 380
[Close]
BLAST of CF832897 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.006e-12
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 3 
Query:    9 LVDKYMKKEIKVDDYITHNMTLGEINQAFRYMHGGDCLHCVL 134
            LV+KYM KEIKVD+YITHN+TLGEIN+AF  +H G CL CVL
Sbjct:  334 LVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVL 375
[Close]
BLAST of CF832897 vs. ExPASy Swiss-Prot
Match: ADHX_PEA (Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.232e-12
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 3 
Query:    9 LVDKYMKKEIKVDDYITHNMTLGEINQAFRYMHGGDCLHCVLKMQD 146
            LV+KY+KKEIKVD+YITHN+TL EIN+AF  +H G CL CVL + D
Sbjct:  333 LVEKYLKKEIKVDEYITHNLTLLEINKAFDLLHEGQCLRCVLAVHD 378
The following BLAST results are available for this feature:
BLAST of CF832897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ADHX_MAIZE4.732e-1373.33Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH P... [more]
ADHX_ARATH4.006e-1273.81Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
ADHX_PEA5.232e-1267.39Alcohol dehydrogenase class-3 OS=Pisum sativum PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02K03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832897 ID=CF832897; Name=CF832897; organism=Citrus sinensis; type=EST; length=466bp
GCCTTGATCTTGTAGACAAGTACATGAAGAAGGAAATTAAGGTTGATGAC
TACATAACTCACAATATGACTCTTGGGGAGATCAACCAGGCATTCCGTTA
TATGCATGGAGGGGACTGCCTACACTGTGTGCTTAAAATGCAGGATTGAC
AGGATCTATTGAGCCCTGCATTATTTCTTATGAAATGGAATATTTTGGTG
TTTACATGGTAATCGCATCCTTTTATGTGCAAACTGTGAGTGTGTGAATA
ACACTACTCTAATGTGAGATAGTCTGGCATGTGTTGCACCAAAAATGTTT
CTATTCAACTTCATTACGCAGCATATTGCTAAGGACTTGCATCGCAATAA
TAAATGTGTTGTCTATGAAGTATGAACTATCTGCTGCTGCACTAGCTTTC
ATATTAACATTTATGGATCCCTGAAAGTTGTCTGGCGTTTGTTTACCAAA
TGCCATCTGATAATTT
back to top