CF832910

Overview
NameCF832910
Unique NameCF832910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1031 contig Csv1_Contig1031:1..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.509e-16
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = -1
Query:  571 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 879
            +K+ ++ +AI  YT  I  +G NA   +NRA AYL+   + +AE DCT+AI LD    KA+ RRGTAR  LG   EA +DF   L+LEP NK+A     +++K
Sbjct:  293 FKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKK 395          

HSP 2 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 45/138 (32.61%), Postives = 72/138 (52.17%), Query Frame = -1
Query:  466 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM*VIESVIRFPEDSALQSVEVKPFLYLRKVIES 879
            +K  ++ +AI  YT+ +  +  N    +NRA+AY     F  AE+DC  A+ L++   KAY RRG AR  L   +EA +D+   L LEP N  A+   + LRK+   +      +P+++    + +K     RK IE+
Sbjct:  144 FKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEAT---NELRKISQALASKENSYPKEA---DIVIKSTEGERKQIEA 275          
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: RPAP3_XENTR (RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.574e-16
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = -1
Query:  571 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 879
            +K+ ++  AI  Y++ ++ +  NA   +NRA AYL+   + +AE DCT AI+LD    KA+ RRGTAR MLG  KEA EDF   L L+P NK+A L  +++ +
Sbjct:  295 FKEGKYEIAIDCYSQGMEADTTNALLPANRAMAYLKIQKYKEAETDCTLAISLDASYCKAFARRGTARIMLGKQKEAKEDFEMVLKLDPGNKQAVLELEKISR 397          
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.574e-16
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  571 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 879
            +K+ ++ +AI  YT  I  +  NA   +NRA AYL+   + +AE DCT+AI LD    KA+ RRGTAR  LG   EA +DF   L+LEP NK+A     R++K
Sbjct:  293 FKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKK 395          
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.574e-16
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = -1
Query:  571 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 879
            +K+ ++ +AI  YT  I  +  NA   +NRA AYL+   + +AE DCT+AI LD    KA+ RRGTAR  LG   EA +DF   L+LEP NK+A+    R++K
Sbjct:  295 FKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKK 397          
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: RPAP3_XENLA (RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.780e-16
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  577 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 879
            +K+ ++  AI  Y++ ++ +  NA   +NRA AYL+   + +AEADCT AI+LD    KA+ RRGTA  MLG  KEA EDF   L L+P NK+A L   ++
Sbjct:  295 FKEGKYEIAIECYSQGMEADNTNALLPANRAMAYLKIQKYKEAEADCTLAISLDASYCKAFARRGTASIMLGKQKEAKEDFEMVLKLDPGNKQAVLELAKI 395          
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: PPP5_RAT (Serine/threonine-protein phosphatase 5 OS=Rattus norvegicus GN=Ppp5c PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.277e-15
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = -1
Query:  568 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 879
            +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D T+AI LDKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K+
Sbjct:   39 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKI 142          
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: RPAP3_CHICK (RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = -1
Query:  574 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 879
            +K+ ++  AI  YT  I  +G NA   +NRA AYL+   + +AE DCT+A+ LD    KA+ RRG AR  LG  KEA++DF   L LEP NK+A     ++R
Sbjct:  294 FKEGKYEAAIECYTRGIAADGTNALLPANRAMAYLKIQKYEEAENDCTQALLLDASYSKAFARRGAARVALGKLKEAMQDFEAVLKLEPGNKQAINELTKIR 395          
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: PPP5_MOUSE (Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  568 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 879
            +K K +  AI FY++AI+LN  NA YY NR+ AYL +  +  A  D T+AI LDKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K+
Sbjct:   39 FKAKDYENAIKFYSQAIELNPGNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKI 142          
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = -1
Query:  568 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 879
            +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D T+AI LDKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K+
Sbjct:   39 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 142          
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: PPP5_SOLLC (Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.146e-14
Identity = 45/119 (37.82%), Postives = 66/119 (55.46%), Query Frame = -1
Query:  529 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM*V-IESVIRFPE 882
            A+K  ++ +AI  YT+AI+LNG NA YY+NRA A+ +   +  A  D T+AI +D +  K Y RRG A   +G +K+A++DF     L P +  A+       K  M +  E  I  PE
Sbjct:   24 AFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLKECEKAVMKLKFEEAISVPE 142          
The following BLAST results are available for this feature:
BLAST of CF832910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RPAP3_HUMAN1.509e-1644.66RNA polymerase II-associated protein 3 OS=Homo sap... [more]
RPAP3_XENTR2.574e-1643.69RNA polymerase II-associated protein 3 OS=Xenopus ... [more]
RPAP3_RAT2.574e-1644.66RNA polymerase II-associated protein 3 OS=Rattus n... [more]
RPAP3_MOUSE2.574e-1644.66RNA polymerase II-associated protein 3 OS=Mus musc... [more]
RPAP3_XENLA9.780e-1644.55RNA polymerase II-associated protein 3 OS=Xenopus ... [more]
PPP5_RAT1.277e-1538.46Serine/threonine-protein phosphatase 5 OS=Rattus n... [more]
RPAP3_CHICK1.668e-1544.12RNA polymerase II-associated protein 3 OS=Gallus g... [more]
PPP5_MOUSE1.668e-1538.46Serine/threonine-protein phosphatase 5 OS=Mus musc... [more]
PPP5_HUMAN1.668e-1538.46Serine/threonine-protein phosphatase 5 OS=Homo sap... [more]
PPP5_SOLLC3.146e-1437.82Serine/threonine-protein phosphatase 5 OS=Solanum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832910 ID=CF832910; Name=CF832910; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTATACATGATTCAAGCTCTTGAAATTTCCAATAA
TCACCTCCATTAAATAGGAAGTTGGCTTGCAAAGCTAGCACTTTTGAAAC
AAAATAAACTTTTAAAGCATGCGAAGATATACATTCAGTTAACAGCTAAC
TGGTTGTGAAAGTCATTTAGATAAAGAGCTAAGGCTATCAAAACAAAAAC
TGATTACCGGATGAAAAGGGTAAAAGCTACACTATTTTATCATTGACCTA
CACTACCCTCTCAAAAGATAGAATTACAACTCAAATATAAATTATTTAAG
AAAAATAAACGGAAAACAAAATTGGACCGCACTCACAAATTTTCATAATA
AATCACTAATTACTGCACAGCACAAGTCAGTTCTAATCAAGGGAAAAACT
CTTCTTTTCATCGCAATGCGAAAGGGCAATAATTTTTGTGTAACTCATGA
GTCGTATGGCAATCAACTCTCAATGACTTTTCTGAGATAAAGAAATGGCT
TCACTTCAACGGATTGTAGGGCTGAATCTTCTGGAAACCTGATTACACTT
TCAATCACCTACATAAATACCTTCCTTAATCTATCAGCAGAAAGGGATGC
TCTTTTATTGGTGGGCTCCAAGACCAGTGCATATGAAAAATCTTCAATTG
CCTCCTTGTAATATCCAAGCATCTCTCTTGCTGTGCCTCTGCGCAAATAA
GCCTTCACATTCTTTTTATCAAGGTTGATTGCCTTTGTACAGTCTGCCTC
AGCTTGAAGGAAGCTGCCGGATTCCAGATATGCTGCAGCCCTGTTGCTGT
AATATGTTGCATTATTTCCATTAAGTTTGATAGCTTCCGTATAAAAGCTA
ATAGCCTTCAGCCACTGCTTATCTTTATATGC
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