CF832910
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.509e-16 Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = -1 Query: 571 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 879 +K+ ++ +AI YT I +G NA +NRA AYL+ + +AE DCT+AI LD KA+ RRGTAR LG EA +DF L+LEP NK+A +++K Sbjct: 293 FKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKK 395 HSP 2 Score: 67.781 bits (164), Expect = 9.473e-11 Identity = 45/138 (32.61%), Postives = 72/138 (52.17%), Query Frame = -1 Query: 466 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM*VIESVIRFPEDSALQSVEVKPFLYLRKVIES 879 +K ++ +AI YT+ + + N +NRA+AY F AE+DC A+ L++ KAY RRG AR L +EA +D+ L LEP N A+ + LRK+ + +P+++ + +K RK IE+ Sbjct: 144 FKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEAT---NELRKISQALASKENSYPKEA---DIVIKSTEGERKQIEA 275
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: RPAP3_XENTR (RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.574e-16 Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = -1 Query: 571 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 879 +K+ ++ AI Y++ ++ + NA +NRA AYL+ + +AE DCT AI+LD KA+ RRGTAR MLG KEA EDF L L+P NK+A L +++ + Sbjct: 295 FKEGKYEIAIDCYSQGMEADTTNALLPANRAMAYLKIQKYKEAETDCTLAISLDASYCKAFARRGTARIMLGKQKEAKEDFEMVLKLDPGNKQAVLELEKISR 397
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.574e-16 Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = -1 Query: 571 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 879 +K+ ++ +AI YT I + NA +NRA AYL+ + +AE DCT+AI LD KA+ RRGTAR LG EA +DF L+LEP NK+A R++K Sbjct: 293 FKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKK 395
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.574e-16 Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = -1 Query: 571 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 879 +K+ ++ +AI YT I + NA +NRA AYL+ + +AE DCT+AI LD KA+ RRGTAR LG EA +DF L+LEP NK+A+ R++K Sbjct: 295 FKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKK 397
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: RPAP3_XENLA (RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.780e-16 Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = -1 Query: 577 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 879 +K+ ++ AI Y++ ++ + NA +NRA AYL+ + +AEADCT AI+LD KA+ RRGTA MLG KEA EDF L L+P NK+A L ++ Sbjct: 295 FKEGKYEIAIECYSQGMEADNTNALLPANRAMAYLKIQKYKEAEADCTLAISLDASYCKAFARRGTASIMLGKQKEAKEDFEMVLKLDPGNKQAVLELAKI 395
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: PPP5_RAT (Serine/threonine-protein phosphatase 5 OS=Rattus norvegicus GN=Ppp5c PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.277e-15 Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = -1 Query: 568 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 879 +K K + AI FY++AI+LN +NA YY NR+ AYL + + A D T+AI LDKK +K Y RR + LG ++ A+ D+ + ++P +K A + K+ Sbjct: 39 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKI 142
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: RPAP3_CHICK (RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15 Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = -1 Query: 574 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 879 +K+ ++ AI YT I +G NA +NRA AYL+ + +AE DCT+A+ LD KA+ RRG AR LG KEA++DF L LEP NK+A ++R Sbjct: 294 FKEGKYEAAIECYTRGIAADGTNALLPANRAMAYLKIQKYEEAENDCTQALLLDASYSKAFARRGAARVALGKLKEAMQDFEAVLKLEPGNKQAINELTKIR 395
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: PPP5_MOUSE (Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15 Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = -1 Query: 568 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 879 +K K + AI FY++AI+LN NA YY NR+ AYL + + A D T+AI LDKK +K Y RR + LG ++ A+ D+ + ++P +K A + K+ Sbjct: 39 FKAKDYENAIKFYSQAIELNPGNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKI 142
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15 Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = -1 Query: 568 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 879 +K K + AI FY++AI+LN +NA YY NR+ AYL + + A D T+AI LDKK +K Y RR + LG ++ A+ D+ + ++P +K A + K+ Sbjct: 39 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 142
BLAST of CF832910 vs. ExPASy Swiss-Prot
Match: PPP5_SOLLC (Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.146e-14 Identity = 45/119 (37.82%), Postives = 66/119 (55.46%), Query Frame = -1 Query: 529 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM*V-IESVIRFPE 882 A+K ++ +AI YT+AI+LNG NA YY+NRA A+ + + A D T+AI +D + K Y RRG A +G +K+A++DF L P + A+ K M + E I PE Sbjct: 24 AFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLKECEKAVMKLKFEEAISVPE 142 The following BLAST results are available for this feature:
BLAST of CF832910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832910 ID=CF832910; Name=CF832910; organism=Citrus sinensis; type=EST; length=882bpback to top |