CF832911

Overview
NameCF832911
Unique NameCF832911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_HELMI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.705e-17
Identity = 46/116 (39.66%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHV 673
            L E GA  +GKT +DEFA   +  N  +    NP    ++P                 FSLG DT G +R P+AFCG++G +P+YGAVS  G+I  ++SLD +G F RD +   HV
Sbjct:  111 LKEAGAVMMGKTNLDEFAMGSSTENSGFFATCNPWDIERVPGGSSGGSAASVAAGQAVFSLGSDTGGSIRQPAAFCGVVGLKPTYGAVSRFGLIAFASSLDQIGPFTRDVRDCAHV 226          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_LEGPC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Corby) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  332 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            + GA  IGKT +DEFA   +  N ++ +  NP    ++P             +LV F++G DT G +R P+AFCGI G +P+YG VS  G++  ++SLD  G FA+  + L  + H +
Sbjct:  109 QNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCI 226          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_LEGPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Paris) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  332 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            + GA  IGKT +DEFA   +  N ++ +  NP    ++P             +LV F++G DT G +R P+AFCGI G +P+YG VS  G++  ++SLD  G FA+  + L  + H +
Sbjct:  109 QNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCI 226          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_LEGPL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Lens) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 2
Query:  332 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            + GA  IGKT +DEFA   +  N ++ +  NP    ++P              LV F++G DT G +R P+AFCGI G +P+YG VS  G++  ++SLD  G FA+  + L  + H +
Sbjct:  109 QNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGSLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCI 226          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_SYNP6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L E GA  +GKT +DEFA   +  N  Y T  NP   +++P             D    +LG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD +G F+R
Sbjct:  107 LAEAGAVAVGKTNLDEFAVGSSTENSAYQTTANPWDLTRVPGGSSGGSAAAVAADECVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFSR 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_SYNE7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus elongatus (strain PCC 7942) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L E GA  +GKT +DEFA   +  N  Y T  NP   +++P             D    +LG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD +G F+R
Sbjct:  107 LAEAGAVAVGKTNLDEFAMGSSTENSAYQTTANPWDLTRVPGGSSGGSAAAVAADECVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFSR 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_METHJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 44/120 (36.67%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            L   GA  +GKT +DEF       N  Y    NP    ++P              LVD ++G DT G +R P+AFCGI+G +P+YG VS  G+I  + SL+ +G  ARD + L ++  V+
Sbjct:   69 LKNAGAAIVGKTNMDEFGMGTTTENSAYGPTLNPLDHQRVPGGSSGGSAAAVAAGLVDCAIGSDTGGSIRCPAAFCGIVGLKPTYGRVSRFGLIAYANSLEQIGPMARDVQTLSNLYSVI 188          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_SYNFM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 48/149 (32.21%), Postives = 71/149 (47.65%), Query Frame = 2
Query:  206 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            G+  A+ D+  ++G VT  G                    L E GA  +GKT +DEFA   +  N  Y    NP    ++P             DL   SLG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G   +D
Sbjct:   72 GIPLAIKDVLCMQGTVTTCGSR--ILENFVPPYDGTVIARLREAGAIFLGKTNMDEFAMGSSTENSAYGVTRNPWDRERVPGGSSGGSAAAVAADLCSGSLGTDTGGSIRQPASFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITKD 218          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATH_YEAST (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Saccharomyces cerevisiae GN=HER2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 47/123 (38.21%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQ---MPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            L + G   +GKT +DEF     G +       NP  P +   +              DLVDF+LG DT G VR+P+ +  +LGF+PSYG +S  G+I  S SLDTVG  ++   +LR V H L
Sbjct:   84 LKQAGVHILGKTNLDEFGMGSGGVHSIRGPVINPLYPHEDKKIMGGSSSGAAASVACDLVDFALGTDTGGSVRLPACYGSVLGFKPSYGRLSRFGVIAYSQSLDTVGILSKKINVLRKVFHTL 206          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_PSYWF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Psychrobacter sp. (strain PRwf-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 49/148 (33.11%), Postives = 69/148 (46.62%), Query Frame = 2
Query:  206 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            GL  A  DLF  +G +T  G                    + E GA C+GK  +DEFA   +  + +Y    NP   S++P               V F+ G DT G +R P++FCG+ G +P+YG VS  G+I  ++SLD  G F R
Sbjct:   73 GLPMAHKDLFCTKGLLTTSGSK--ILHNFVSPYDATIVSNIREAGAVCLGKLNMDEFAMGSDNESSYYGAVHNPWDLSRVPGGSSGGSAAAVAAGFVPFATGSDTGGSIRQPASFCGLTGIKPTYGRVSRFGMIAYASSLDQAGTFGR 218          
The following BLAST results are available for this feature:
BLAST of CF832911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
GATA_HELMI8.705e-1739.66Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_LEGPC2.533e-1636.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEGPA2.533e-1636.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEGPL3.308e-1636.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_SYNP64.320e-1638.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNE74.320e-1638.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_METHJ4.320e-1636.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_SYNFM9.625e-1632.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATH_YEAST1.642e-1538.21Glutamyl-tRNA(Gln) amidotransferase subunit A, mit... [more]
GATA_PSYWF1.642e-1533.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832911 ID=CF832911; Name=CF832911; organism=Citrus sinensis; type=EST; length=743bp
CAAATTAAGAATCATATCGAGTTCCTATATGGCTTCTCAATCTGCTAATT
TATGGGTATTGTTGGGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAA
AAGCTTAAGAAGAATATAAAACAAGATTTTGGAGCGTTCATCGAGAAACT
TCAACTGCTTCCTCCGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTC
TTACCGGCCTCTCTTTTGCCGTCTCTGACCTATTCGATATCGAAGGATAC
GTGACTGGTTTTGGGCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTC
TCGAACGTCTACTGTGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCA
TTGGCAAAACTGTGGTTGATGAATTTGCCTACAGTATAAATGGAACAAAT
AAGCATTATGATACGCCTACTAATCCTGCTGCACCTTCACAAATGCCGGG
TGGATCTTCTAGTGGGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATT
TCTCCTTGGGTATTGATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTT
TGTGGAATTTTAGGGTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGG
GATTATACCCATTTCAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGG
ATCCTAAAATTCTGCGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTT
GCAGCTCAACGTAGTCCAAGACAAATTATAATTGCTGATGATT
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