CF832912

Overview
NameCF832912
Unique NameCF832912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: SSDH_ARATH (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1 PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 92/115 (80.00%), Postives = 105/115 (91.30%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDMNR 353
            +V+ +V   M++S  E+FGPVAPL+ FKTEE+AI +ANDT AGLAAYIFTN++QR+WRV EALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDE+LEIKYVCLGDMNR
Sbjct:  413 TVIRDVSDNMIMSKEEIFGPVAPLIRFKTEEDAIRIANDTIAGLAAYIFTNSVQRSWRVFEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLEIKYVCLGDMNR 527          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: SSDH_ORYSJ (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica GN=ALDH5F1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.473e-47
Identity = 88/114 (77.19%), Postives = 105/114 (92.11%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDMN 350
            +V+ NV ++ML+   EVFGPVAPL+ FKTEE+AI MANDTNAGLAAYIFT ++ R+WRVSEALEYGLVGVNEG+ISTEVAPFGGVKQSGLGREGSKYGMDE+LE+KY+C+G++N
Sbjct:  414 TVVGNVSNDMLLFREEVFGPVAPLVPFKTEEDAIRMANDTNAGLAAYIFTKSIPRSWRVSEALEYGLVGVNEGIISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYICMGNLN 527          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: SSDH_RAT (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh5a1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 68/113 (60.18%), Postives = 87/113 (76.99%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 347
            ++LSNV  +ML  T E FGPVAP++ F  EEEA+ +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  411 TLLSNVTRDMLCITEETFGPVAPVIKFDKEEEAVAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLEVKYVCYGGL 523          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: SSDH_PONPY (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pongo pygmaeus GN=ALDH5A1 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.332e-33
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 347
            ++L NV  +ML +  E FGP+AP++ F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  423 TLLCNVTQDMLCTHEETFGPLAPVIKFNTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: SSDH_MOUSE (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh5a1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.332e-33
Identity = 67/113 (59.29%), Postives = 86/113 (76.11%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 347
            ++LSNV  +ML  T E FGP+AP++ F  EEEA+ +AN    GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  411 TLLSNVTRDMLCITEETFGPLAPVIKFDKEEEAVAIANAAEVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLEVKYVCYGGL 523          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: GABD_ECOLI (Succinate-semialdehyde dehydrogenase [NADP+] OS=Escherichia coli (strain K12) GN=gabD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.332e-33
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 341
            ++L +V +   VS  E FGP+APL  FK E + I  ANDT  GLAAY +  +L R +RV EALEYG+VG+N G+IS EVAPFGG+K SGLGREGSKYG++++LEIKY+C+G
Sbjct:  371 TILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCIG 481          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: SSDH_PANTR (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pan troglodytes GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.964e-33
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 347
            ++L NV  +ML +  E FGP+AP++ F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  423 TLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: SSDH_PANPA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pan paniscus GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.964e-33
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 347
            ++L NV  +ML +  E FGP+AP++ F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  423 TLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: SSDH_HYLLA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Hylobates lar GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.964e-33
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 347
            ++L NV  +ML +  E FGP+AP++ F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  423 TLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: SSDH_HUMAN (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH5A1 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.964e-33
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 347
            ++L NV  +ML +  E FGP+AP++ F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  423 TLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535          
The following BLAST results are available for this feature:
BLAST of CF832912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
SSDH_ARATH1.001e-4780.00Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_ORYSJ8.473e-4777.19Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_RAT1.833e-3360.18Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_PONPY5.332e-3359.29Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_MOUSE5.332e-3359.29Succinate-semialdehyde dehydrogenase, mitochondria... [more]
GABD_ECOLI5.332e-3359.46Succinate-semialdehyde dehydrogenase [NADP+] OS=Es... [more]
SSDH_PANTR6.964e-3359.29Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_PANPA6.964e-3359.29Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_HYLLA6.964e-3359.29Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_HUMAN6.964e-3359.29Succinate-semialdehyde dehydrogenase, mitochondria... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832912 ID=CF832912; Name=CF832912; organism=Citrus sinensis; type=EST; length=658bp
TTATAGCCTCAGTCCTTAGCAATGTCAAGAGTGAGATGCTTGTTTCGACA
TAGGAAGTATTCGGACCTGTGGCCCCACTTCTATGCTTCAAAACTGAGGA
GGAAGCTATCCATATGGCCAATGATACCAATGCAGGGTTAGCTGCTTATA
TATTTACAAACAATCTTCAACGTACATGGCGTGTCTCTGAAGCTCTAGAA
TATGGACTCGTTGGTGTTAATGAAGGATTAATTTCAACAGAGGTGGCTCC
TTTTGGTGGTGTTAAACAATCTGGTCTTGGACGGGAAGGTTCAAAGTATG
GGATGGATGAATTCCTGGAAATAAAATATGTGTGCTTGGGAGACATGAAC
AGAAAATGATGGGCCAGTTTTGTACCTGTATGTTACCGGGCTTATGGAGA
AGAAGGAAGGAGCCTTTAGTACTGCCTTTGAACTGTATTTTGAAGACGGA
TTGGAATAGTGTGAGCCTCAAGCGTTTGATGTGGAGGTAGTAGTGAGCCA
TAGTTGGTTTGCTATTGATACCCCATGTACATAAATAAGTTTGCAAAATG
GAACTTGAATGTCTAGTAGTGAGCCATAGGTGGTTTGCTATTGATACCCC
ATGTACATAAATAAGTTTGCAAAATGGAACTTGAATGTCTGGTGTCAAAA
AAAAAAAA
back to top