CF832917
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_ARATH (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2) HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47 Identity = 101/155 (65.16%), Postives = 109/155 (70.32%), Query Frame = 3 Query: 117 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581 MV+LTADLIWKSPHFFNAIKERELDLRGNKI IENLGATEDQFDTIDL+DNEIVKLEN P+ EFLPK EIDPL S+PKLQ+L+LLDN+ITKK NYRLYVIHKLKSLRVLDF K+ ER Sbjct: 1 MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENFPYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSLLDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKER 155
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_MOUSE (U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 4.834e-26 Identity = 67/155 (43.23%), Postives = 89/155 (57.42%), Query Frame = 3 Query: 117 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581 MV+LTA+LI ++ + NA+++RELDLRG KI IENLGAT DQFD ID +DNEI KL+ P + LP ++DPL SL L +L++L N +T K +YRLYVI+K+ +RVLDF+KV ER Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_MACFA (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.834e-26 Identity = 67/155 (43.23%), Postives = 89/155 (57.42%), Query Frame = 3 Query: 117 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581 MV+LTA+LI ++ + NA+++RELDLRG KI IENLGAT DQFD ID +DNEI KL+ P + LP ++DPL SL L +L++L N +T K +YRLYVI+K+ +RVLDF+KV ER Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_HUMAN (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 4.834e-26 Identity = 67/155 (43.23%), Postives = 89/155 (57.42%), Query Frame = 3 Query: 117 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581 MV+LTA+LI ++ + NA+++RELDLRG KI IENLGAT DQFD ID +DNEI KL+ P + LP ++DPL SL L +L++L N +T K +YRLYVI+K+ +RVLDF+KV ER Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_DROME (Probable U2 small nuclear ribonucleoprotein A' OS=Drosophila melanogaster GN=U2A PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.313e-26 Identity = 63/155 (40.65%), Postives = 87/155 (56.13%), Query Frame = 3 Query: 117 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581 MV+LT +LI +S + N +ERELDLRG KI IENLGAT DQFDTIDL+DN++ KL+N+PH E +P +++PL KL+ + LL N ++ KPNYR Y+ +K LR+LDF+K+ +R Sbjct: 1 MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLSDNDLRKLDNLPHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDLEPLVGFTKLETICLLINPVSTKPNYREYMAYKFPQLRLLDFRKIKQKDR 155
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_CAEEL (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=sap-1 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.555e-24 Identity = 61/155 (39.35%), Postives = 83/155 (53.55%), Query Frame = 3 Query: 117 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581 MVRLT +L + P F N++ RE++LRG KI IEN+G T DQFD IDL DN+I KL+N P LP +I+PL KL+++T + N IT K NYR+Y+I+KL ++RV+DF +V ER Sbjct: 1 MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNFPTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTFIGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTER 155
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_ASPFU (U2 small nuclear ribonucleoprotein A' OS=Aspergillus fumigatus GN=lea1 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.035e-20 Identity = 57/154 (37.01%), Postives = 81/154 (52.60%), Query Frame = 3 Query: 120 VRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581 +RLT +LI S + N +K+RELDLRG+KI IENLG +DQ D ID DN+I L N P +P ++DPL +L +L L LL+N +T+K +YR +VI ++ S+R LD++KV + ER Sbjct: 1 MRLTVELIQNSLSYINPLKDRELDLRGHKIPTIENLGIAKDQ-DAIDFTDNDISSLGNFPFFPRLHTLLLARNRVKHIQPTIASTIPNLTTLVLTANNMAELADLDPLRNLTRLTHLVLLENPVTRKEHYRYWVIWRIPSVRFLDYQKVKDAER 153
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_SCHPO (U2 small nuclear ribonucleoprotein A' OS=Schizosaccharomyces pombe GN=lea1 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18 Identity = 53/154 (34.42%), Postives = 75/154 (48.70%), Query Frame = 3 Query: 120 VRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581 +RL A+ + + P F + +KE ELDLR +I IENLG D D ID DN+I L N P + LP ++DPL S P+L L+ +DN + +K YRLY+I ++ SL +LDF++V ER Sbjct: 1 MRLNAEFLSQVPSFISPLKETELDLRWYQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEIADLDPLASCPQLTNLSCIDNPVAQKQYYRLYLIWRIPSLHILDFERVRRNER 154
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_USTMA (U2 small nuclear ribonucleoprotein A' OS=Ustilago maydis GN=LEA1 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16 Identity = 51/154 (33.12%), Postives = 76/154 (49.35%), Query Frame = 3 Query: 120 VRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581 ++LT +L+ +S N +++RELDLRG KI IENLG T DQ D IDL DN+I L N P LP E+ L+ +L++L L+ +++ YR +VI KL +RVLD++++ + ER Sbjct: 1 MKLTPELLSRSSSSINTLRDRELDLRGLKIPAIENLGVTRDQNDAIDLTDNDIRYLGNFPLLQQLKTLQLANNLISRIDPRIGHSLPALHSLNLTNNCISDLSELVHLSKCRRLEYLCLMGTPASREAQYREFVIWKLPQVRVLDYQRIKDKER 154
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_NEUCR (U2 small nuclear ribonucleoprotein A' OS=Neurospora crassa GN=lea-1 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.535e-16 Identity = 54/154 (35.06%), Postives = 71/154 (46.10%), Query Frame = 3 Query: 120 VRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581 +RLTADLI S + N +KERE+DLRG++I IENLG D ID DN+I L N P P +++ L P+L L L DN +TKK NYR +V+ +R LD+ KV + ER Sbjct: 1 MRLTADLINNSLSYLNPLKEREIDLRGHRIPAIENLGVA-GPHDAIDFTDNDIQVLGNFPLSPRIRTLLLARNRIAQIQSTLPNATPNLKNLVLASNNIGELADLEVLGRFPRLTHLVLTDNPVTKKENYRYWVLWLCPQVRFLDYVKVKDAER 153 The following BLAST results are available for this feature:
BLAST of CF832917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832917 ID=CF832917; Name=CF832917; organism=Citrus sinensis; type=EST; length=656bpback to top |