CF832917

Overview
NameCF832917
Unique NameCF832917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9708 contig Csv1_Contig9708:216..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_ARATH (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 101/155 (65.16%), Postives = 109/155 (70.32%), Query Frame = 3
Query:  117 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581
            MV+LTADLIWKSPHFFNAIKERELDLRGNKI  IENLGATEDQFDTIDL+DNEIVKLEN P+                      EFLPK               EIDPL S+PKLQ+L+LLDN+ITKK NYRLYVIHKLKSLRVLDF K+   ER
Sbjct:    1 MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENFPYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSLLDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKER 155          
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_MOUSE (U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.834e-26
Identity = 67/155 (43.23%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  117 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581
            MV+LTA+LI ++  + NA+++RELDLRG KI  IENLGAT DQFD ID +DNEI KL+  P                       + LP                ++DPL SL  L +L++L N +T K +YRLYVI+K+  +RVLDF+KV   ER
Sbjct:    1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155          
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_MACFA (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.834e-26
Identity = 67/155 (43.23%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  117 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581
            MV+LTA+LI ++  + NA+++RELDLRG KI  IENLGAT DQFD ID +DNEI KL+  P                       + LP                ++DPL SL  L +L++L N +T K +YRLYVI+K+  +RVLDF+KV   ER
Sbjct:    1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155          
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_HUMAN (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.834e-26
Identity = 67/155 (43.23%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  117 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581
            MV+LTA+LI ++  + NA+++RELDLRG KI  IENLGAT DQFD ID +DNEI KL+  P                       + LP                ++DPL SL  L +L++L N +T K +YRLYVI+K+  +RVLDF+KV   ER
Sbjct:    1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155          
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_DROME (Probable U2 small nuclear ribonucleoprotein A' OS=Drosophila melanogaster GN=U2A PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.313e-26
Identity = 63/155 (40.65%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  117 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581
            MV+LT +LI +S  + N  +ERELDLRG KI  IENLGAT DQFDTIDL+DN++ KL+N+PH                      E +P                +++PL    KL+ + LL N ++ KPNYR Y+ +K   LR+LDF+K+   +R
Sbjct:    1 MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLSDNDLRKLDNLPHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDLEPLVGFTKLETICLLINPVSTKPNYREYMAYKFPQLRLLDFRKIKQKDR 155          
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_CAEEL (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=sap-1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.555e-24
Identity = 61/155 (39.35%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  117 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581
            MVRLT +L  + P F N++  RE++LRG KI  IEN+G T DQFD IDL DN+I KL+N P                         LP                +I+PL    KL+++T + N IT K NYR+Y+I+KL ++RV+DF +V   ER
Sbjct:    1 MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNFPTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTFIGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTER 155          
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_ASPFU (U2 small nuclear ribonucleoprotein A' OS=Aspergillus fumigatus GN=lea1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.035e-20
Identity = 57/154 (37.01%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  120 VRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581
            +RLT +LI  S  + N +K+RELDLRG+KI  IENLG  +DQ D ID  DN+I  L N P                         +P                ++DPL +L +L  L LL+N +T+K +YR +VI ++ S+R LD++KV + ER
Sbjct:    1 MRLTVELIQNSLSYINPLKDRELDLRGHKIPTIENLGIAKDQ-DAIDFTDNDISSLGNFPFFPRLHTLLLARNRVKHIQPTIASTIPNLTTLVLTANNMAELADLDPLRNLTRLTHLVLLENPVTRKEHYRYWVIWRIPSVRFLDYQKVKDAER 153          
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_SCHPO (U2 small nuclear ribonucleoprotein A' OS=Schizosaccharomyces pombe GN=lea1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18
Identity = 53/154 (34.42%), Postives = 75/154 (48.70%), Query Frame = 3
Query:  120 VRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581
            +RL A+ + + P F + +KE ELDLR  +I  IENLG   D  D ID  DN+I  L N P                       + LP                ++DPL S P+L  L+ +DN + +K  YRLY+I ++ SL +LDF++V   ER
Sbjct:    1 MRLNAEFLSQVPSFISPLKETELDLRWYQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEIADLDPLASCPQLTNLSCIDNPVAQKQYYRLYLIWRIPSLHILDFERVRRNER 154          
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_USTMA (U2 small nuclear ribonucleoprotein A' OS=Ustilago maydis GN=LEA1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16
Identity = 51/154 (33.12%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  120 VRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581
            ++LT +L+ +S    N +++RELDLRG KI  IENLG T DQ D IDL DN+I  L N P                         LP                E+  L+   +L++L L+    +++  YR +VI KL  +RVLD++++ + ER
Sbjct:    1 MKLTPELLSRSSSSINTLRDRELDLRGLKIPAIENLGVTRDQNDAIDLTDNDIRYLGNFPLLQQLKTLQLANNLISRIDPRIGHSLPALHSLNLTNNCISDLSELVHLSKCRRLEYLCLMGTPASREAQYREFVIWKLPQVRVLDYQRIKDKER 154          
BLAST of CF832917 vs. ExPASy Swiss-Prot
Match: RU2A_NEUCR (U2 small nuclear ribonucleoprotein A' OS=Neurospora crassa GN=lea-1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.535e-16
Identity = 54/154 (35.06%), Postives = 71/154 (46.10%), Query Frame = 3
Query:  120 VRLTADLIWKSPHFFNAIKERELDLRGNKIAGIENLGATEDQFDTIDLADNEIVKLENMPHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLTLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVTN*ER 581
            +RLTADLI  S  + N +KERE+DLRG++I  IENLG      D ID  DN+I  L N P                          P                +++ L   P+L  L L DN +TKK NYR +V+     +R LD+ KV + ER
Sbjct:    1 MRLTADLINNSLSYLNPLKEREIDLRGHRIPAIENLGVA-GPHDAIDFTDNDIQVLGNFPLSPRIRTLLLARNRIAQIQSTLPNATPNLKNLVLASNNIGELADLEVLGRFPRLTHLVLTDNPVTKKENYRYWVLWLCPQVRFLDYVKVKDAER 153          
The following BLAST results are available for this feature:
BLAST of CF832917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RU2A_ARATH1.001e-4765.16U2 small nuclear ribonucleoprotein A' OS=Arabidops... [more]
RU2A_MOUSE4.834e-2643.23U2 small nuclear ribonucleoprotein A' OS=Mus muscu... [more]
RU2A_MACFA4.834e-2643.23U2 small nuclear ribonucleoprotein A' OS=Macaca fa... [more]
RU2A_HUMAN4.834e-2643.23U2 small nuclear ribonucleoprotein A' OS=Homo sapi... [more]
RU2A_DROME6.313e-2640.65Probable U2 small nuclear ribonucleoprotein A' OS=... [more]
RU2A_CAEEL1.555e-2439.35Probable U2 small nuclear ribonucleoprotein A' OS=... [more]
RU2A_ASPFU3.035e-2037.01U2 small nuclear ribonucleoprotein A' OS=Aspergill... [more]
RU2A_SCHPO4.845e-1834.42U2 small nuclear ribonucleoprotein A' OS=Schizosac... [more]
RU2A_USTMA3.472e-1633.12U2 small nuclear ribonucleoprotein A' OS=Ustilago ... [more]
RU2A_NEUCR4.535e-1635.06U2 small nuclear ribonucleoprotein A' OS=Neurospor... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02K16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832917 ID=CF832917; Name=CF832917; organism=Citrus sinensis; type=EST; length=656bp
TTGATTTGTTTCCTCGGTCCAGCTGCTGACGTCTCTATCGTTCCTGCCTC
CGGCTTCGTTCGCCATTGTCAGCGGCACAAGTGAAATTGGAGGATCACTA
TAAGATTTAAAAGAAAATGGTGAGACTGACTGCCGACTTGATTTGGAAGA
GCCCTCATTTCTTCAATGCCATTAAGGAGCGCGAGTTGGACCTTCGAGGT
AATAAAATTGCTGGGATTGAAAACTTGGGCGCCACTGAGGATCAATTTGA
TACCATTGATTTGGCGGACAATGAGATTGTCAAGCTTGAGAACATGCCCC
ATCTTAATCGTTTGGGCACTTTGATTATAAATAACAATAGAATTACTCGA
ATTAATCCCAACATTGGAGAGTTCTTGCCAAAATTACACACTTTGGTTTT
GACAAACAACAGGCTTGTCAATCTAGTGGAGATTGATCCTCTAACATCCC
TTCCAAAGTTGCAGTTCCTTACTTTATTGGACAATAGCATCACCAAAAAG
CCCAATTATCGGCTGTATGTGATTCACAAGCTGAAATCTCTCCGTGTTTT
GGATTTCAAGAAGGTGACAAACTAGGAACGGATGGAAGCAGCAAGTCTGT
TTGCCTCAGAAGAAATGGAAGAGGAGGCTAAGAAGGAATCTATGAAGACA
TTGATG
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