CF832929

Overview
NameCF832929
Unique NameCF832929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1032 contig Csv1_Contig1032:2..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832929 vs. ExPASy Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae GN=UAF30 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.683e-13
Identity = 37/95 (38.95%), Postives = 59/95 (62.11%), Query Frame = -2 
Query:  240 KRGAPTRPTGISKVSPVFPALAKFFGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVKTA*VLDC 524
            K+G  ++    ++   +  +LA   G  E +R++ VR++WA++K HNLQNP NK+EILCDEKL+ I  GK +    E+ K+L+ H  +   + DC
Sbjct:  110 KKGTVSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELIL-GK-STNMFEMHKILASHMTEPKKISDC 202
The following BLAST results are available for this feature:
BLAST of CF832929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UAF30_YEAST7.683e-1338.95Upstream activation factor subunit UAF30 OS=Saccha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02L01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832929 ID=CF832929; Name=CF832929; organism=Citrus sinensis; type=EST; length=747bp
TTTTTTTTTTTTTTTTTAGGGAAACCAAGACAGGCCATTAACTTCTTCCC
CTCACTAATTTTTACAGCATGTCCACCCAAACAATTTAAAAAGAGTCACA
AACTCAACCATGAGACCAACCATGTATCAACATAAGAATGCAATTACATC
AACAAAAGGGTATGAAAAGTGACAAGAGCTCCCTCATGGAGTTGGGAGAG
CAATTTGAAACCAAACACCTGTACTTGTTATCAAAATCAGCAGTCAAGGA
CTCAAGCAGTCTTCACGAAATGGGGGCTCAACAGTTTCCCAATCTCCAGG
AATCCAACAGCATTTTTCCCTTCAAAGATGGCTTTCAGCTTCTCATCACA
GAGGATTTCCCGCTTGTTCTCAGGATTCTGGAGGTTGTGGGTCTTGACGT
GGGCCCAGATCTGACGGACGGCGTCGGAGCGGGAGGCTTCAGGGGCGCCG
AAAAATTTCGCAAGCGCAGGAAAAACAGGGCTCACCTTGGAAATTCCAGT
AGGTCGAGTTGGTGCACCGCGCTTTACTGGAGATTTGGCTCTGGGTTTCT
TCGTTGTTTTTGATTTCGCTTTAGTGGAAGCCGCTGAGGAGGCAGCGGCA
AAGGACTTGGCCGGAGCCAGGAGGGCCCGGCAGCCGTTGAAAACCCTAGC
GGCAGCTGAAGACATTGCGATCACCAAGTATTTGTTAGTTTGCTTGAGAG
TGAACTGACGACTGAGCGAGTGAAAAAAGGAGCGGACTCTCCAACCT
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