CF832934

Overview
NameCF832934
Unique NameCF832934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832934 vs. ExPASy Swiss-Prot
Match: SYP52_ARATH (Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.902e-72
Identity = 135/178 (75.84%), Postives = 155/178 (87.08%), Query Frame = -3
Query:  232 SGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEEPVVSTKHIALAVNEELALHTRLIDDLDQHVDVTDSPLRRVQKNLAILNKRTKGGCTCMCM 765
            +GP++QR ASAIRRKITILGTRLDSLQSLL K+PGKQ +SEKEMNRRKDM+ NLRSK NQ+AS LNMSNFANRDSL G ++K  D +NR +G+DNQG+V FQRQ+MREQDEGLEKLEE V+STKHIALAVNEEL L TRLIDDLD  VD+TDS LRRVQK+LA++NK  K GC+CM M
Sbjct:   35 TGPDAQRRASAIRRKITILGTRLDSLQSLLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDAINRVSGMDNQGIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDYDVDITDSRLRRVQKSLALMNKSMKSGCSCMSM 212          
BLAST of CF832934 vs. ExPASy Swiss-Prot
Match: SYP51_ARATH (Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.239e-70
Identity = 133/178 (74.72%), Postives = 156/178 (87.64%), Query Frame = -3
Query:  232 SGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEEPVVSTKHIALAVNEELALHTRLIDDLDQHVDVTDSPLRRVQKNLAILNKRTKGGCTCMCM 765
            +GP++QR ASAIRRKITI G +LDSLQSLL+++ GK PISEKEMNRRKDM+ NLRSK NQMA+ LNMSNFANRDSLLGP+IK  D M+R TG+DNQG+VG+QRQ+MREQDEGLE+LE  V+STKHIALAV+EEL L TRLIDDLD HVDVTDS LRRVQK+LA++NK  + GC+CM M
Sbjct:   35 TGPDAQRRASAIRRKITIFGNKLDSLQSLLAEIHGK-PISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSMSRVTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDYHVDVTDSRLRRVQKSLAVMNKNMRSGCSCMSM 211          
BLAST of CF832934 vs. ExPASy Swiss-Prot
Match: STX8B_DICDI (Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = -3
Query:  232 ISEKEMNRRKDMLANLRSKVNQMASTLN--MSNFANRDSLLGPEIK-SADVMNRATG----------LDNQGLVGFQRQIMREQDEGLEKLEEPVVSTKHIALAVNEELALHTRLIDDLDQHVDVTDSPLRRVQKNLAILNKRTKGGCTCMCM 651
            I EKE+ RRK+ + +L S  NQ+ STL+  ++N + ++ L+G          NR  G           DNQ L   Q+ IMREQDE L+ L + ++  K++A A++ EL  H  ++DD++   D     LR   + +  + +     C  +C+
Sbjct:   71 IQEKELLRRKNKVESLISMKNQLNSTLDAAINNTSQKNELMGNNNGVGIGYSNRQFGKPKETEATKQFDNQQLFTNQQHIMREQDESLDLLSQSIMRQKNMAHAMSNELDQHNEMLDDVEIGTDAVSMRLRNANRRMETIKQNAGSTCMIVCI 223          
The following BLAST results are available for this feature:
BLAST of CF832934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYP52_ARATH5.902e-7275.84Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 ... [more]
SYP51_ARATH3.239e-7074.72Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 ... [more]
STX8B_DICDI2.359e-1230.72Probable syntaxin-8B OS=Dictyostelium discoideum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02L04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832934 ID=CF832934; Name=CF832934; organism=Citrus sinensis; type=EST; length=773bp
TGAATGCCCTCAACGCTTTTGACTTACACTTACAAAGTCTGACAAAGAAA
ACAAGCAAAATCAAACGGAAATAGTTTGCACACAACAACTAAGAGTGAAA
CCCAGTCCGGCACACCAAAAGACAGACAGCAAGGGAGGAAACAGTTGCAT
TCACCATTGTGAGTTTTACAAGTATTTGATCAACATATATATGACCACAA
CCAGAACAACGATTCCGATAACAGCTAAAAGCATGCACATACACGTGCAA
CCACCCTTTGTGCGCTTATTCAAAATTGCCAGGTTCTTCTGCACTCGCCG
TAGGGGAGAATCTGTAACATCCACATGCTGGTCCAAGTCATCAATAAGTC
TAGTGTGCAGGGCAAGTTCTTCATTGACTGCCAATGCAATATGCTTTGTA
CTGACTACTGGCTCCTCCAGTTTCTCAAGCCCTTCATCTTGCTCTCTCAT
AATTTGTCGTTGAAAACCAACAAGGCCCTGATTGTCCAAGCCAGTTGCTC
GGTTCATGACATCGGCTGACTTTATCTCTGGTCCAAGCAGGCTATCCCTA
TTAGCAAAGTTTGACATGTTCAACGTGGAAGCCATTTGATTCACTTTGGA
TCTCAAATTAGCAAGCATGTCCTTCCGACGATTCATCTCTTTCTCCGAAA
TGGGCTGCTTCCCGGGAAGCTTAGATAAAAGGGACTGCAAGCTATCCAAT
CTGGTTCCTAATATGGTAATCTTCCTCCGTATGGCAGATGCATGACGCTG
GGATTCAGGTCCAGATGCGGGCA
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