CF832935

Overview
NameCF832935
Unique NameCF832935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1557 contig Csv1_Contig1557:69..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832935 vs. ExPASy Swiss-Prot
Match: SYP52_ARATH (Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.894e-58
Identity = 108/152 (71.05%), Postives = 134/152 (88.16%), Query Frame = 2 
Query:  143 MASASDSWIKEYSEAIKLADDISGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREPDEGLERLEE 598
            MAS+SD W++EY+EA+KL++DI+GM+SER++   +GP++QR ASAIRRKITILGTRLDSLQSLL K+PGKQ +SEKEMNRRKDM+ NLRSK NQ+AS LNMSNFANRDSL G ++K  D +NR +G+DNQG+V FQRQ+MRE DEGLE+LEE
Sbjct:    1 MASSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSLQSLLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDAINRVSGMDNQGIVVFQRQVMREQDEGLEKLEE 152
[Close]
BLAST of CF832935 vs. ExPASy Swiss-Prot
Match: SYP51_ARATH (Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.414e-57
Identity = 109/151 (72.19%), Postives = 134/151 (88.74%), Query Frame = 2 
Query:  143 MASASDSWIKEYSEAIKLADDISGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREPDEGLERLE 595
            MAS+SDSW++ Y+EA+KL+++I+GMISERSS   +GP++QR ASAIRRKITI G +LDSLQSLL+++ GK PISEKEMNRRKDM+ NLRSK NQMA+ LNMSNFANRDSLLGP+IK  D M+R TG+DNQG+VG+QRQ+MRE DEGLE+LE
Sbjct:    1 MASSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSLQSLLAEIHGK-PISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSMSRVTGMDNQGIVGYQRQVMREQDEGLEQLE 150
The following BLAST results are available for this feature:
BLAST of CF832935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SYP52_ARATH8.894e-5871.05Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 ... [more]
SYP51_ARATH4.414e-5772.19Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02L04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832935 ID=CF832935; Name=CF832935; organism=Citrus sinensis; type=EST; length=600bp
AGGGGCCGTACAAAACCGGCAGTGTTGACGCTAATTCCCGTGTTTTAGCT
CGTTAATGCGACTTAACTTTGCTCCATCCTAAACTTCTCCAATCCAATCC
CTCTCTCAGACTAGAATCCGAAATCTACCCATAATCTGTTCAATGGCTTC
TGCTTCGGACTCGTGGATAAAGGAATACAGTGAAGCAATAAAACTGGCAG
ATGATATTAGTGGGATGATATCAGAACGAAGTTCGATGCCCGCATCTGGA
CCTGAATCCCAGCGTCATGCATCTGCCATACGGAGGAAGATTACCATATT
AGGAACCAGATTGGATAGCTTGCAGTCCCTTTTATCTAAGCTTCCCGGGA
AGCAGCCCATTTCGGAGAAAGAGATGAATCGTCGGAAGGACATGCTTGCT
AATTTGAGATCCAAAGTGAATCAAATGGCTTCCACGTTGAACATGTCAAA
CTTTGCTAATAGGGATAGCCTGCTTGGACCAGAGATAAAGTCAGCCGATG
TCATGAACCGAGCAACTGGCTTGGACAATCAGGGCCTTGTTGGTTTTCAA
CGACAAATTATGAGAGAGCCAGATGAAGGGCTTGAGAGACTGGAGGAGAC
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