CF832949

Overview
NameCF832949
Unique NameCF832949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:76..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGKY_TOBAC (Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.009e-49
Identity = 96/118 (81.36%), Postives = 102/118 (86.44%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            KVVPA+ IPDGWMGLD+GPDA+KSF   LD+TKT+IWNGPMG FEFDKFA G EAIAKKLAELSGKGV  IIGGGDSVA VEKVGL +KMSHIS GGGASLELLEGK LPG L  DDA
Sbjct:  284 KVVPASEIPDGWMGLDIGPDAIKSFGSALDTTKTVIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLAEKMSHISTGGGASLELLEGKPLPGVLALDDA 401          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGKY_WHEAT (Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.221e-48
Identity = 92/118 (77.97%), Postives = 103/118 (87.29%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            K+VPATAIPDGWMGLDVGPD++K+F E LD+TKT+IWNGPMG FEF+KFA G +AIAK+LAEL+GKGV  IIGGGDSVA VEK GL DKMSHIS GGGASLELLEGK LPG L  D+A
Sbjct:  284 KIVPATAIPDGWMGLDVGPDSIKTFAEALDTTKTVIWNGPMGVFEFEKFAAGTDAIAKQLAELTGKGVTTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKPLPGVLALDEA 401          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.144e-47
Identity = 89/118 (75.42%), Postives = 102/118 (86.44%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            K+VPA+AIPDGWMGLD+GPD++K+F + LD+TKT+IWNGPMG FEFDKFA G EAIAKKLA+LSGKGV  IIGGGDSVA VEKVG+   MSHIS GGGASLELLEGK LPG +  D+A
Sbjct:  358 KIVPASAIPDGWMGLDIGPDSVKTFNDALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKVLPGVIALDEA 475          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGKH_WHEAT (Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.733e-45
Identity = 87/117 (74.36%), Postives = 100/117 (85.47%), Query Frame = -1
Query:  251 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDD 601
            + VPA+AIPDGWMGLD+GPD++K+F + LD+T+TIIWNGPMG FEFDKFA G E+IAKKLAELS KGV  IIGGGDSVA VEKVG+ D MSHIS GGGASLELLEGK LPG +  D+
Sbjct:  355 QTVPASAIPDGWMGLDIGPDSVKTFNDALDTTQTIIWNGPMGVFEFDKFAVGTESIAKKLAELSKKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDE 471          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 3.319e-44
Identity = 84/118 (71.19%), Postives = 99/118 (83.90%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            K+VPA+ IPDGWMGLD+GPD++K+F E LD+T+T+IWNGPMG FEF+KFA G EAIAKKL E+S KG   IIGGGDSVA VEKVG+ + MSHIS GGGASLELLEGK LPG L  ++A
Sbjct:  311 KIVPASGIPDGWMGLDIGPDSIKTFSEALDTTQTVIWNGPMGVFEFEKFAAGTEAIAKKLEEISKKGATTIIGGGDSVAAVEKVGVAEAMSHISTGGGASLELLEGKQLPGVLALNEA 428          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.151e-43
Identity = 84/118 (71.19%), Postives = 97/118 (82.20%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            K+VPA+ I DGWMGLD+GPD++K+F E LD+T+T+IWNGPMG FE +KFA G EAIA KLAELS KGV  IIGGGDSVA VEKVG+   MSHIS GGGASLELLEGK LPG +  D+A
Sbjct:  356 KIVPASGIEDGWMGLDIGPDSIKTFNEALDTTQTVIWNGPMGVFEMEKFAAGTEAIANKLAELSEKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKVLPGVIALDEA 473          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_SYNS3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9311) GN=pgk PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.106e-42
Identity = 85/118 (72.03%), Postives = 91/118 (77.12%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            +V   TAIPDGWMGLD+GPDA+K F+  L   KT+IWNGPMG FEFDKFA G  AIA  LAELSGKG   IIGGGDSVA VEK GL +KMSHIS GGGASLELLEGK LPG    DDA
Sbjct:  284 QVADVTAIPDGWMGLDIGPDAIKVFQAALADCKTVIWNGPMGVFEFDKFAAGTNAIATTLAELSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_CYAP4 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=pgk PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.542e-41
Identity = 82/118 (69.49%), Postives = 94/118 (79.66%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            + V   +IPDGWMGLD+GPDA+K+F+E L   KT+IWNGPMG FEFDKFA G EAIA  LA L+GKG   IIGGGDSVA VEKVG+ ++MSHIS GGGASLELLEGK LPG +  DDA
Sbjct:  289 QTVSVESIPDGWMGLDIGPDAVKTFQEALSDCKTVIWNGPMGVFEFDKFAVGTEAIAHSLAGLTGKGASTIIGGGDSVAAVEKVGVAEQMSHISTGGGASLELLEGKELPGIVALDDA 406          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_SYNPX (Phosphoglycerate kinase OS=Synechococcus sp. (strain WH8102) GN=pgk PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.629e-41
Identity = 83/118 (70.34%), Postives = 92/118 (77.97%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            +V   TAIPDGWMGLD+GPDA+K F++ L   +T+IWNGPMG FEF+KFA G  AIA  LAELSGKG   IIGGGDSVA VEK GL DKMSHIS GGGASLELLEGK LPG    +DA
Sbjct:  284 QVADVTAIPDGWMGLDIGPDAVKVFQDALGDCQTVIWNGPMGVFEFEKFATGTNAIATTLAELSGKGCCTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKVLPGVAALNDA 401          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_SYNS9 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9902) GN=pgk PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.651e-41
Identity = 81/118 (68.64%), Postives = 90/118 (76.27%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            ++   TAIPDGWMGLD+GPDA+K F+  L   KT+IWNGPMG FEFDKFA G  AIA  LAE+ GKG   IIGGGDSVA VEK GL +KMSHIS GGGASLELLEGK LPG    D+A
Sbjct:  284 QIADVTAIPDGWMGLDIGPDAIKVFQAALADCKTVIWNGPMGVFEFDKFAAGTNAIATTLAEIGGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDNA 401          
The following BLAST results are available for this feature:
BLAST of CF832949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGKY_TOBAC2.009e-4981.36Phosphoglycerate kinase, cytosolic OS=Nicotiana ta... [more]
PGKY_WHEAT2.221e-4877.97Phosphoglycerate kinase, cytosolic OS=Triticum aes... [more]
PGKH_TOBAC7.144e-4775.42Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKH_WHEAT8.733e-4574.36Phosphoglycerate kinase, chloroplastic OS=Triticum... [more]
PGKH_SPIOL3.319e-4471.19Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
PGKH_ARATH2.151e-4371.19Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]
PGK_SYNS33.106e-4272.03Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_CYAP41.542e-4169.49Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_SYNPX2.629e-4170.34Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNS97.651e-4168.64Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832949 ID=CF832949; Name=CF832949; organism=Citrus sinensis; type=EST; length=601bp
TTTTTTTTTTTTTTTTTCCCCGAAACTTAAACCCTTACCATCACAATGTT
CCAAAAGGGGATCAAATCCAAAAAAATGCCTCCCCATTGATGCCTGGGAA
AAAAAATTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGAT
AAAGTTTAACTTTTATCCCCTCGGGGGTGACAACCACCCACACATACAAC
TCTGGAAATGGCCCATTTAAAAAAGGAAAGCCCAGGAACTGGGTTTAAGC
ATCATCAAAAACAAGCCCCCCAGGGAGTGTTTTGCCCTCAAGGAGCTCTA
AGCTGGCTCCCCCTCCAGGGGAAATATGGCTCATCTTGTCACCCAAACCA
ACCTTCTCTACGGGTGCAACTGAGTCACCCCCCCCAATGATGGGGGGCAC
TCCCTTCCCGCTGAGCTCCGCAAGCTTTTTGGCAATTGCCTCAGGGCCAC
CAGCAAATTTATCAAATTCAAACCCCCCCATAGGTCCATTCCAAATGATG
GTTTTAGTAGAATCCAAACCTTCCCTGAATGACTTGAGGGCATCAGGGCC
AACATCCAAGCCCATCCAACCATCTGGAATTGCCGTTGCTGGCACCACCT
T
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