CF832955

Overview
NameCF832955
Unique NameCF832955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2004 contig Csv1_Contig2004:239..1011. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832955 vs. ExPASy Swiss-Prot
Match: TIF9_ARATH (Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.576e-38
Identity = 97/181 (53.59%), Postives = 125/181 (69.06%), Query Frame = -2
Query:  266 GLENKE-NSSNKPQFKKFL-RQRSFRDIQGAISKINPEIIKSVIAS-----GSAKSSISLPSTPKEEPITFPDVPLYRHIPKFGSENVSETAPLTIFYNGTVAVFDVHREKAEHILKLAVEGNSKSFESN---DANV--ASDQQQQLLETFNTGDLPIARRKSLQRFLEKRKERLTLVSPY 772
            GLE K+ N++ KP+F+KFL R+RSFRDIQGAISKI+PEIIKS++AS      S+  S S+PSTP+E+    P  P++  + +  +E VS T P+TIFYNG+V+VF V R KA  I+K+A E  SK  ES+   D +V   +  + +L      GDLPIARRKSLQRFLEKRKERL   SPY
Sbjct:   12 GLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGNNSDSSAKSRSVPSTPREDQPQIPISPVHASLARSSTELVSGTVPMTIFYNGSVSVFQVSRNKAGEIMKVANEAASKKDESSMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQRFLEKRKERLVSTSPY 192          
BLAST of CF832955 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = -2
Query:  266 SETAPLTIFYNGTVAVF-DVHREKAEHILKLAVEGNSKSFESNDANVASD--------------QQQQLLETFNTG--DLPIARRKSLQRFLEKRKERLTLVSPY 529
            S+TAPLTIFY G V VF D   EKA+ ++ LA +G + S   N  ++ S+                Q+ +++  T   +LPIARR SL RFLEKRK+R+T  +PY
Sbjct:  122 SQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPY 226          
BLAST of CF832955 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  266 SETAPLTIFYNGTVAVFD-VHREKAEHILKLAVEGNSKSFESNDANVASDQ----QQQLLETFN---------------------TGDLPIARRKSLQRFLEKRKERLTLVSPY 529
            S++APLTIFY G V VFD    EKA+ ++ LA +G++KSF    A V ++     Q+++  + N                       +LPIARR SL RFLEKRK+R+T  +PY
Sbjct:  115 SQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEPIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPY 228          
The following BLAST results are available for this feature:
BLAST of CF832955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TIF9_ARATH5.576e-3853.59Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE... [more]
TI10A_ARATH1.171e-1141.90Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH9.911e-1139.47Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02L18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832955 ID=CF832955; Name=CF832955; organism=Citrus sinensis; type=EST; length=773bp
TTTTTTTTTTTTTTTTTAAAGGAAACCGCAACGAACGATACCGTTCTATT
TGTATATAATATTACATCCAATGAGTCAAACGAGGCAGGCTATTAACTAT
TAAGTACGACCAAAAGCTCAACCTCCAAAAAGATGGAAACAGAATTTCTA
CAAAACTACTCTTGGGCCCATTAACTTTCTCCTCTTTTTAGGCCGGCAAT
AACATCAATCTCCATTGATCTTCATGTCCCAATTACCAAAACGCGTTTTT
TTAAGTGTGACATGAATAAGGAGACACCAAAGTCAATCTCTCTTTGCGTT
TCTCCAAAAATCTCTGGAGTGACTTTCTCCTCGCAATTGGCAGATCTCCA
GTATTAAAAGTCTCAAGCAGCTGTTGTTGCTGATCGCTTGCAACGTTAGC
ATCATTTGATTCGAAACTTTTTGAGTTTCCTTCAACAGCAAGTTTCAGAA
TGTGCTCAGCCTTCTCTCGATGAACATCAAAAACGGCGACGGTTCCGTTA
TAAAATATAGTCAGAGGAGCTGTTTCCGAAACGTTCTCTGAACCAAACTT
TGGAATGTGCCTGTACAGAGGCACGTCGGGAAAAGTAATCGGCTCTTCTT
TTGGAGTAGACGGCAAAGAGATTGATGATTTCGCAGAACCAGAAGCAATC
ACAGATTTAATAATCTCAGGATTAATCTTCGAAATGGCGCCTTGAATGTC
TCGAAAGCTTCTTTGGCGAAGAAATTTCTTGAACTGAGGCTTGTTAGAGG
AGTTTTCTTTATTCTCCAAGCCG
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