CF832956

Overview
NameCF832956
Unique NameCF832956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2004 contig Csv1_Contig2004:41..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832956 vs. ExPASy Swiss-Prot
Match: TIF9_ARATH (Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.228e-44
Identity = 106/192 (55.21%), Postives = 136/192 (70.83%), Query Frame = 2
Query:  167 MSRATVELDFFGLENKE-NSSNKPQFKKFL-RQRSFRDIQGAISKINPEIIKSVIAS-----GSAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHREKAEHILKLAVEGNSKSFESN---DANV--ASDQQQQLLETLNTGDLPIARRKSLQRFLEKRKERLTLVSPY 706
            MS+AT+ELDF GLE K+ N++ KP+F+KFL R+RSFRDIQGAISKI+PEIIKS++AS      S+  S S+PSTP+E+    P  P++  + +S +E VS T P+TIFYNG+V+VF V R KA  I+K+A E  SK  ES+   D +V   +  + +L      GDLPIARRKSLQRFLEKRKERL   SPY
Sbjct:    1 MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGNNSDSSAKSRSVPSTPREDQPQIPISPVHASLARSSTELVSGTVPMTIFYNGSVSVFQVSRNKAGEIMKVANEAASKKDESSMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQRFLEKRKERLVSTSPY 192          
BLAST of CF832956 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  443 SETAPLTIFYNGTVAVF-DVHREKAEHILKLAVEGNSKSFESNDANVASD--------------QQQQLLETLNTG--DLPIARRKSLQRFLEKRKERLTLVSPY 706
            S+TAPLTIFY G V VF D   EKA+ ++ LA +G + S   N  ++ S+                Q+ +++  T   +LPIARR SL RFLEKRK+R+T  +PY
Sbjct:  122 SQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPY 226          
BLAST of CF832956 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  386 TFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFD-VHREKAEHILKLAVEGNSKSFESNDANVASDQ----QQQLLETLN---------------------TGDLPIARRKSLQRFLEKRKERLTLVSPY 706
            T  DV + +   KS     S++APLTIFY G V VFD    EKA+ ++ LA +G++KSF    A V ++     Q+++  + N                       +LPIARR SL RFLEKRK+R+T  +PY
Sbjct:   97 TKEDVQMIKETTKSVKPE-SQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEPIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPY 228          
The following BLAST results are available for this feature:
BLAST of CF832956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TIF9_ARATH8.228e-4455.21Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE... [more]
TI10A_ARATH1.085e-1141.90Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH2.416e-1137.59Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02L18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832956 ID=CF832956; Name=CF832956; organism=Citrus sinensis; type=EST; length=736bp
CGTACCTCGTGCTCCATCTCCATCTCCATCTCCATCTCCATCTCCCTCCC
GCTTAACCATTTAAGTTGTTCAACTTCTCCAAACCTCTAAAGCCAAAGTT
CGTTTTTCTTTTCTTCAACTCGTCTCTCACGATTCATTCACTACTCAACA
TTTTTCTTCATTAGCCATGTCTCGAGCTACCGTTGAACTCGATTTCTTCG
GCTTGGAGAATAAAGAAAACTCCTCTAACAAGCCTCAGTTCAAGAAATTT
CTTCGCCAAAGAAGCTTTCGAGACATTCAAGGCGCCATTTCGAAGATTAA
TCCTGAGATTATTAAATCTGTGATTGCTTCTGGTTCTGCGAAATCATCAA
TCTCTTTGCCGTCTACTCCAAAAGAAGAGCCGATTACTTTTCCCGACGTG
CCTCTGTACAGGCACATTCCAAAGTCTGGTTCAGAGAACGTTTCGGAAAC
AGCTCCTCTGACTATATTTTATAACGGAACCGTCGCCGTTTTTGATGTTC
ATCGAGAGAAGGCTGAGCACATTCTGAAACTTGCTGTTGAAGGAAACTCA
AAAAGTTTCGAATCAAATGATGCTAACGTTGCAAGCGATCAGCAACAACA
GCTGCTTGAGACTCTTAATACTGGAGATCTGCCAATTGCGAGGAGAAAGT
CACTCCAGAGATTTCTGGAGAAACGCAAAGAGAGATTGACTTTGGTGTCT
CCTTATTCATGTCACACTTAAAAAAACGCGTTTTGG
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