CF832968

Overview
NameCF832968
Unique NameCF832968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5981 contig Csv1_Contig5981:361..1048. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832968 vs. ExPASy Swiss-Prot
Match: SELT_ARATH (SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.840e-55
Identity = 105/153 (68.63%), Postives = 125/153 (81.70%), Query Frame = -3
Query:  231 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLSKXXXXXXXXXXXXXXXGEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVA 686
            P+QK  G +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+L+K               GEQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV CN +LVFSKLKEGRFPGEIEL+DL++
Sbjct:   46 PAQKSTG-VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFSKLKEGRFPGEIELRDLIS 197          
BLAST of CF832968 vs. ExPASy Swiss-Prot
Match: HSP6_HETGL (Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 45/145 (31.03%), Postives = 72/145 (49.66%), Query Frame = -3
Query:  210 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLSKXXXXXXXXXXXXXXXGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSR 644
            V  +FC SC YR       ++L  ++PGID+   NYPP + + + ++               G   FP LG+  P ++  + +NR  +    +L  N ++  LQS+GAFE+Y   + ++SKL+ GR P   EL   +   LA  R
Sbjct:   83 VKFSFCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCVVSGRSPFPTLGLETPTFFQWMLSNRLSAALMLFLFSNAIEGMLQSTGAFEIYIESERIWSKLESGRVPSPPELFQAIDSHLAIRR 227          
BLAST of CF832968 vs. ExPASy Swiss-Prot
Match: SELT_DROME (SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 47/148 (31.76%), Postives = 67/148 (45.27%), Query Frame = -3
Query:  222 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLSKXXXXXXXXXXXXXXXGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 665
            G     T+   +C SC YR        +L  ++P I V   NY PP     LSK                   F  LG+  P W+  ++AN+  +    + +GN L++ L SSGAFE+  ND  V+SKL+ GRFP    L  ++   L
Sbjct:   37 GQNIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVWSKLQTGRFPSPEVLFQIIDNHL 184          
The following BLAST results are available for this feature:
BLAST of CF832968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SELT_ARATH1.840e-5568.63SelT-like protein OS=Arabidopsis thaliana GN=At3g4... [more]
HSP6_HETGL3.751e-1631.03Putative esophageal gland cell secretory protein 6... [more]
SELT_DROME1.334e-1331.76SelT-like protein OS=Drosophila melanogaster GN=CG... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02M01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832968 ID=CF832968; Name=CF832968; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTTGCTGTTAAAAGTAATTGTTGTCGACATGTTTTACAGAGCC
AATGTTCATTATGATAGTGGCATCAAAATCTGTTTATATATTTGCCATAA
CAACCTAGATAATGAAATCTTGTACAAGGCTCTCAGTCAATCCTTTGATT
CCAACCCTCAATGTCCAGTGAATGAACTAGGACCATACACTTCCAACACC
ATCCACAAGTCTTGATGAAGCCAATTGTTTGGCAACAAGATCTTTTAGCT
CAATCTCGCCTGGAAACCTCCCCTCCTTCAGTTTAGAGAAGACCAAGTCA
TCATTACAGTAAACTTCAAAAGCCCCAGAGCTTTGGAGGAAGGACTGCAA
AAAGTTTCCAATAAGCCAGGTAGATGCTATGGACCCAAACCTATTGGCAC
GCAGCGAATAATACCATGGAGGTGGTGTCATTCCCAGCATCGGAAAAATC
TGTTCGCCTGCCACTACGATCCCAATAACCCCTATCTGAACAGCAGGCAC
CACTTTAGAAAGTAGACGCTTTGGCAGGGGTGGGGGATAATTTGCAAGGA
CCACATCAATCCCAGGAAACTGAGTCTCCAACATCCTTTTCATTGTTATT
GCAGTGCCCCTATAAGAGCAAGAAGCACAAAAGTTGATATTAACAGTACT
GCCATACCCAATTCCTCCGACAATTTTCTGTGAAGGAA
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