CF832977

Overview
NameCF832977
Unique NameCF832977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3382 contig Csv1_Contig3382:611..1365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.167e-38
Identity = 86/210 (40.95%), Postives = 119/210 (56.67%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY--AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+NGL FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN   + +G I N+GNPHNE ++R+L EM+   +    +          +DV S  +YG+GY D   R P +    + L W P   +   +  TL Y  RT
Sbjct:  453 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLD---TLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRVIENRNGQCDGQIINIGNPHNEASIRELGEMLLTSFNAHPLRDRFPPFAGFIDVESSSYYGKGYQDVAHRTPSIRNAKRLLEWEPTVKMEQTVAETLDYFLRT 659          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.215e-38
Identity = 81/210 (38.57%), Postives = 126/210 (60.00%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED+S  + G I KQRW Y+ +KQL++R+I+A G +NGL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL++GG+ +R F  I D IEA+  +IEN   R +G I N+GNP NE ++++LAEM+   + +  +           +V S ++YG+GY D + R P +    + L W PK  + + +E TL +  RT
Sbjct:  446 EDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPDNEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEETVEHTLDFFLRT 652          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.053e-37
Identity = 84/210 (40.00%), Postives = 119/210 (56.67%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY--AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+NGL FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN   + +G I N+GNPHNE ++R+L +M+   +    +          ++V S  +YG+GY D   R P +    + L W P   +   +  TL Y  RT
Sbjct:  452 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLD---TLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRNGQCDGQIINIGNPHNEASIRELGDMLLTSFNAHPLRDRFPPFAGFIEVESSSYYGKGYQDVAHRTPSIRNAKRLLEWEPTVKMEQTVAETLDYFLRT 658          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.681e-37
Identity = 85/210 (40.48%), Postives = 120/210 (57.14%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL+FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KL+DGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+ E +    +           DV S  +YG+GY D + R P +    + L W P  ++   +  TL Y  RT
Sbjct:  446 EDHSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLMDGGAQKRCFTDINDGIEALFRIIENRDGLCDGQIVNIGNPTNEASIRELAEMLLESFNNHPLRDRFPPFAGFKDVESSSYYGKGYQDVEHRTPSIKNARRLLDWQPTIAMQQTVADTLDYFLRT 652          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_PROMH (Bifunctional polymyxin resistance protein arnA OS=Proteus mirabilis (strain HI4320) GN=arnA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.502e-37
Identity = 84/215 (39.07%), Postives = 123/215 (57.21%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAI 682
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KLVDGG+ +R F  I D IEA+  +IEN   + +G I N+GNP NE ++R+LAEM+ + + K  + G          + S  +YG+GY D + R P +    + L W P       +E TL +  R   E +
Sbjct:  446 EDNSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLD---NLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDINDGIEALFRIIENRDNKCDGQIINIGNPTNEASIRELAEMLLDCFEKHELRGHFPPFAGFKKIESSSYYGKGYQDVEHRKPSIKNAERLLDWKPTIETRQTVEETLDFFLRGAVEEL 657          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_YERE8 (Bifunctional polymyxin resistance protein arnA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=arnA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.573e-37
Identity = 84/208 (40.38%), Postives = 121/208 (58.17%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED+S  I G I KQRW Y+ +KQL++R+I+A GA+  L+FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG+ +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   + K   E     P      D+ S  +YG+GY D + R P +    + L W P+ +L   +  TL +
Sbjct:  446 EDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKENLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDIHDGIEALFRIIENRDGACDGQIINIGNPTNEASIRELAEMLLRCFEK--HELRHNFPPFAGFKDIESSAYYGKGYQDVEYRTPSIRNARRILDWQPEIALEQTVMETLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_ERWT9 (Bifunctional polymyxin resistance protein arnA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.738e-36
Identity = 79/206 (38.35%), Postives = 121/206 (58.74%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPAR-ANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED+S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I D IEA+ L+IEN  +  +G I N+GNP NE +++QLAE + E + +  +           +V S  +YG+GY D + R P +    Q L W P  ++   ++ TL +
Sbjct:  446 EDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKEGLRFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGRQKRCFTDIHDGIEALFLIIENKQKNCDGQIINIGNPENEASIKQLAEQLLESFERHPLRDRFPPFAGFREVESSTYYGKGYQDVEHRKPSIRNAKQLLNWQPTIAMDKTIDDTLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.056e-36
Identity = 79/210 (37.62%), Postives = 123/210 (58.57%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  + G I KQRW Y+ +KQL++R+I+A G +  L+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL++GG+ +R F  I D IEA+  +IEN   R +G I N+GNP NE ++++LAEM+   + +  +           +V S ++YG+GY D + R P +    + L W PK  + + +E TL +  RT
Sbjct:  446 EDTSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKYDLKFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPENEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEETVEHTLDFFLRT 652          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_YERPY (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=arnA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.126e-35
Identity = 82/208 (39.42%), Postives = 119/208 (57.21%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGQIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_YERPS (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis GN=arnA PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.126e-35
Identity = 82/208 (39.42%), Postives = 119/208 (57.21%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGQIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
The following BLAST results are available for this feature:
BLAST of CF832977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARNA_ERWCT3.167e-3840.95Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP79.215e-3838.57Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PECCP2.053e-3740.00Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SERP52.681e-3740.48Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PROMH3.502e-3739.07Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERE84.573e-3740.38Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWT91.738e-3638.35Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP35.056e-3637.62Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPY1.126e-3539.42Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPS1.126e-3539.42Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832977 ID=CF832977; Name=CF832977; organism=Citrus sinensis; type=EST; length=755bp
TAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAG
ATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTAT
GCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGA
GAATGGTCTTGAGTTCACCATTGTGAGGCCCTTTAACTGGATTGGTCCGA
GGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCAAGG
GTTCTGGCATGCTTTAGTAACAATCTCCTTCGCCGGCAGCCACTCAAGCT
TGTCGACGGTGGCCAATCTCAGAGGACTTTTATTTACATAAAGGATGCTA
TTGAAGCTGTTCTATTAATGATTGAAAATCCAGCAAGGGCCAATGGTCAT
ATTTTCAATGTGGGCAACCCCCACAATGAAGTTACAGTTCGACAGCTTGC
TGAGATGATGACTGAGGTGTATGCAAAGGTGAGTGGAGAGGCTGCTTTGG
AGGAGCCAACAGTTGATGTCAGCTCCAAAGAATTTTATGGTGAAGGATAT
GATGATAGTGACAAGAGAATTCCAGACATGACCATTATAAATCAACAGCT
TGGTTGGAACCCGAAGACCTCACTTTGGGACTTGCTTGAATCAACCCTTA
CCTATCAGCACAGGACATATGCGGAGGCCATAAAGCATGCCGTGGCAACA
CCAGTTGCATCCAGCTGAGGAGATATAGTGTTCAGATGCTTGTGGCAAAC
ATTTA
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