CF832980

Overview
NameCF832980
Unique NameCF832980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10235 contig Csv1_Contig10235:487..1243. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832980 vs. ExPASy Swiss-Prot
Match: BH003_ARATH (Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.441e-48
Identity = 94/140 (67.14%), Postives = 115/140 (82.14%), Query Frame = -1
Query:  287 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNIFKMDKASLLGDAITYITDLQMKIRVLETEKD-MSTNKQKQISVPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSG 703
            ANGREE LNHVEAERQRREKLNQRFYALRAVVPNI KMDKASLL DAITYITD+Q KIRV ETEK  M   +  QI+  E+D+Q RH+DAVVR+SCPL+ HPVS V++T  E++++  +SNV+ TE+ V+HTF+++ Q G
Sbjct:  312 ANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITDMQKKIRVYETEKQIMKRRESNQITPAEVDYQQRHDDAVVRLSCPLETHPVSKVIQTLRENEVMPHDSNVAITEEGVVHTFTLRPQGG 451          
BLAST of CF832980 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.870e-38
Identity = 81/145 (55.86%), Postives = 105/145 (72.41%), Query Frame = -1
Query:  287 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNIFKMDKASLLGDAITYITDLQMKIRVLETEK---DMSTNKQKQISV---PEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSG 703
            ANGREEPLNHVEAERQRREKLNQRFYALR+VVPNI KMDKASLLGDAI+YI +LQ K++++E E+   D S ++   I+V   PE+D Q  +E+ VVRV  PLD HP S +++      +   E+ +S  ED + HTF I++ +G
Sbjct:  387 ANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDERVGTDKSLSESNTITVEESPEVDIQAMNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEAKLSLAEDTMFHTFVIKSNNG 531          
BLAST of CF832980 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.935e-35
Identity = 73/139 (52.52%), Postives = 101/139 (72.66%), Query Frame = -1
Query:  293 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNIFKMDKASLLGDAITYITDLQMKIRVLETEKD-MSTNKQKQISV-PEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQ 703
            ANGR E LNHVEAERQRREKLNQRFYALR+VVPNI KMDKASLLGDA++YI +L  K++V+E E++ +  +    IS+  +I+ Q   ED  VR++CPL+ HP S +   F E ++    SN+  ++D V+HTF ++++
Sbjct:  425 ANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAERERLGYSSNPPISLDSDINVQTSGEDVTVRINCPLESHPASRIFHAFEESKVEVINSNLEVSQDTVLHTFVVKSE 563          
BLAST of CF832980 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.322e-27
Identity = 69/162 (42.59%), Postives = 96/162 (59.26%), Query Frame = -1
Query:  299 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNIFKMDKASLLGDAITYITDLQMKIRVLETEKDMSTNKQKQISVP---------------------------EIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQ 703
            ANGREEPLNHVEAERQRREKLNQRFY+LRAVVPN+ KMDKASLLGDAI+YI++L+ K++  E++K+     QKQI V                            E+D +    DA++R+ C   +HP +  M+   E  +    +++S   D +I   +++
Sbjct:  408 ANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAESDKE---ELQKQIDVMNKEAGNAKSSVKDRKCLNQESSVLIEMEVDVKIIGWDAMIRIQCSKRNHPGAKFMEALKELDLEVNHASLSVVNDLMIQQATVK 566          
BLAST of CF832980 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.145e-26
Identity = 70/166 (42.17%), Postives = 95/166 (57.23%), Query Frame = -1
Query:  290 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNIFKMDKASLLGDAITYITDLQMKIRVLETEKD--------------------------MSTNKQKQIS--VPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQS 703
            ANGREEPLNHVEAERQRREKLNQRFY+LRAVVPN+ KMDKASLLGDAI+YI +L+ K++  E++K+                           S+N+    S    EID +    D ++RV C   DHP +  M+   E  +    +++S   D +I   +++  S
Sbjct:  407 ANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQQAESDKEEIQKKLDGMSKEGNNGKGCGSRAKERKSSNQDSTASSIEMEIDVKIIGWDVMIRVQCGKKDHPGARFMEALKELDLEVNHASLSVVNDLMIQQATVKMGS 572          
BLAST of CF832980 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.151e-26
Identity = 66/160 (41.25%), Postives = 93/160 (58.13%), Query Frame = -1
Query:  299 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNIFKMDKASLLGDAITYITDLQMKIRVLETEKDMSTNKQKQISVP-------------------------EIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQ 703
            ANGREEPLNHVEAERQRREKLNQRFYALRAVVPN+ KMDKASLLGDAI YI +L+ K+   E+EK    N+ +++ +                          EI+ +    DA++RV     +HP + +M    + ++    +++S   D +I   +++
Sbjct:  444 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQIKNQLEEVKLELAGRKASASGGDMSSSCSSIKPVGMEIEVKIIGWDAMIRVESSKRNHPAARLMSALMDLELEVNHASMSVVNDLMIQQATVK 603          
BLAST of CF832980 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.205e-22
Identity = 61/157 (38.85%), Postives = 93/157 (59.24%), Query Frame = -1
Query:  299 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNIFKMDKASLLGDAITYITDLQMKIRVLETEK---DMSTNKQKQI-----SVPEI-DFQPR-------------HEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQ 703
            A+GR++PLNHVEAER RREKLN RFYALRAVVPN+ KMDK SLL DA+ YI +L+ K   +E EK   ++  N+ K+I     ++P +  ++ +              +DA+VRV    D HP + +M    + ++    +++S   D +I   +++
Sbjct:  335 AHGRDKPLNHVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENVELEKHAIEIQFNELKEIAGQRNAIPSVCKYEEKASEMMKIEVKIMESDDAMVRVESRKDHHPGARLMNALMDLELEVNHASISVMNDLMIQQANVK 491          
BLAST of CF832980 vs. ExPASy Swiss-Prot
Match: BH014_ARATH (Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.389e-19
Identity = 57/159 (35.85%), Postives = 78/159 (49.06%), Query Frame = -1
Query:  287 LNHVEAERQRREKLNQRFYALRAVVPNIFKMDKASLLGDAITYITDLQMKIRVLE--------TEKDMSTNKQKQISVPEIDFQPRH-------------------EDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSG 682
            L+HVEAE+QRREKLN RFYALRA+VP + +MDKASLL DA++YI  L+ KI  LE        TE D   N     S   +++Q                      E+A++RV     +HP S++M    E     Q +N S     ++    +    G
Sbjct:  248 LSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKIDDLETEIKKMKMTETDKLDNSSSNTSPSSVEYQVNQKPSKSNRGSDLEVQVKIVGEEAIIRVQTENVNHPTSALMSALMEMDCRVQHANASRLSQVMVQDVVVLVPEG 406          
BLAST of CF832980 vs. ExPASy Swiss-Prot
Match: TT8_ARATH (Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = -1
Query:  371 EPLNHVEAERQRREKLNQRFYALRAVVPNIFKMDKASLLGDAITYITDLQMKIRVLET----EKDMSTNKQKQISVPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSE 688
            E L+HV AER+RREKLN++F  LR++VP + KMDK S+LGD I Y+  L+ ++  LE     ++   T   K+ +  E++      D ++ + C   D  +  +++   E
Sbjct:  360 EDLSHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHHEQQHKRTRTCKRKTSEEVEVSIIENDVLLEMRCEYRDGLLLDILQVLHE 469          
BLAST of CF832980 vs. ExPASy Swiss-Prot
Match: BH025_ARATH (Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 45/139 (32.37%), Postives = 71/139 (51.08%), Query Frame = -1
Query:  341 NHVEAERQRREKLNQRFYALRAVVPNIFKMDKASLLGDAITYITDLQMKIRVLETEKD----------------MSTNKQ----------KQISVPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNV 679
            +H+ AER+RREKL QRF AL A+VP + KMDKAS+LGDA+ +I  LQ ++  LE +K                 +  N Q            + +PEI+ +   ED ++++ C      ++ +M    +  I+   S+V
Sbjct:  152 DHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQERVGELEEQKKERRLESMVLVKKSKLILDDNNQSFSSSCEDGFSDLDLPEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSV 290          
The following BLAST results are available for this feature:
BLAST of CF832980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
BH003_ARATH4.441e-4867.14Transcription factor bHLH3 OS=Arabidopsis thaliana... [more]
AIB_ARATH1.870e-3855.86Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
BH013_ARATH1.935e-3552.52Transcription factor bHLH13 OS=Arabidopsis thalian... [more]
BH004_ARATH4.322e-2742.59Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
ATR2_ARATH2.145e-2642.17Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
RAP1_ARATH8.151e-2641.25Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
BH028_ARATH3.205e-2238.85Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
BH014_ARATH7.389e-1935.85Transcription factor bHLH14 OS=Arabidopsis thalian... [more]
TT8_ARATH1.763e-1234.55Transcription factor TT8 OS=Arabidopsis thaliana G... [more]
BH025_ARATH3.007e-1232.37Transcription factor bHLH25 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832980 ID=CF832980; Name=CF832980; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTAAAATCAAACCTGATTCGTATCGATTCATCATA
TTTCACACAACTCAACATTCAAAGAACACAACAAATTCATTCAACCTTGT
TTTGAAGTTAGAAATTATAGAATAAAGATCTTTAATGCAAAGAAATATGC
CAGCCACAGAATCTTTTCTGACATGGAGATGCACAGCAGCAGCACACAGA
AAGAGCACCTCATAAACACAACTTAATTTACAATCACATCATTTAGAAAG
GGCAGCAAGTAGTTTCTCTTTTAACTGCTCAGAAGCACCACTTTGAGTCT
GAATGGAAAATGTATGGATAACCTTGTCTTCCGTTGTAGAAACATTAGAC
TCTTGAGCTACAATTTGATGTTCACTGAATGTTTTCATGACACTTGAAAC
CGGGTGGTCGTCCAGAGGACAGCTCACCCGCACAACTGCATCCTCGTGTC
TGGGCTGAAAATCAATCTCTGGCACAGAAATCTGCTTTTGTTTATTGGTT
GACATATCCTTCTCTGTCTCCAAAACCCTGATTTTCATCTGGAGGTCAGT
GATATAGGTAATGGCATCACCAAGCAGAGAGGCTTTGTCCATCTTAAAGA
TATTAGGGACAACAGCTCTTAAAGCATAGAATCGCTGGTTAAGCTTCTCC
CGCCTCTGCCGCTCTGCTTCAACATGATTCAACGGCTCTTCTCTCCCATT
TGCAGGCTTTCTTCCTCTCTTCCTAGGTTTCCGATCATCGCCCTGAGGTG
ATGAATC
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