CF832981

Overview
NameCF832981
Unique NameCF832981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10235 contig Csv1_Contig10235:486..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832981 vs. ExPASy Swiss-Prot
Match: BH003_ARATH (Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.852e-49
Identity = 95/140 (67.86%), Postives = 116/140 (82.86%), Query Frame = 2
Query:   56 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEKD-MSNNKQKQISVPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSG 472
            ANGREE LNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLL DAITYITD+Q KIRV ETEK  M   +  QI+  E+D+Q RH+DAVVR+SCPL+ HPVS V++T  E++++  +SNV+ TE+ V+HTF+++ Q G
Sbjct:  312 ANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITDMQKKIRVYETEKQIMKRRESNQITPAEVDYQQRHDDAVVRLSCPLETHPVSKVIQTLRENEVMPHDSNVAITEEGVVHTFTLRPQGG 451          
BLAST of CF832981 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 6.428e-39
Identity = 82/145 (56.55%), Postives = 106/145 (73.10%), Query Frame = 2
Query:   56 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEK---DMSNNKQKQISV---PEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSG 472
            ANGREEPLNHVEAERQRREKLNQRFYALR+VVPNISKMDKASLLGDAI+YI +LQ K++++E E+   D S ++   I+V   PE+D Q  +E+ VVRV  PLD HP S +++      +   E+ +S  ED + HTF I++ +G
Sbjct:  387 ANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDERVGTDKSLSESNTITVEESPEVDIQAMNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEAKLSLAEDTMFHTFVIKSNNG 531          
BLAST of CF832981 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.900e-36
Identity = 74/139 (53.24%), Postives = 102/139 (73.38%), Query Frame = 2
Query:   56 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEKD-MSNNKQKQISV-PEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQ 466
            ANGR E LNHVEAERQRREKLNQRFYALR+VVPNISKMDKASLLGDA++YI +L  K++V+E E++ +  +    IS+  +I+ Q   ED  VR++CPL+ HP S +   F E ++    SN+  ++D V+HTF ++++
Sbjct:  425 ANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAERERLGYSSNPPISLDSDINVQTSGEDVTVRINCPLESHPASRIFHAFEESKVEVINSNLEVSQDTVLHTFVVKSE 563          
BLAST of CF832981 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.708e-28
Identity = 70/162 (43.21%), Postives = 97/162 (59.88%), Query Frame = 2
Query:   56 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEKDMSNNKQKQISVP---------------------------EIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQ 460
            ANGREEPLNHVEAERQRREKLNQRFY+LRAVVPN+SKMDKASLLGDAI+YI++L+ K++  E++K+     QKQI V                            E+D +    DA++R+ C   +HP +  M+   E  +    +++S   D +I   +++
Sbjct:  408 ANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAESDKE---ELQKQIDVMNKEAGNAKSSVKDRKCLNQESSVLIEMEVDVKIIGWDAMIRIQCSKRNHPGAKFMEALKELDLEVNHASLSVVNDLMIQQATVK 566          
BLAST of CF832981 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.309e-27
Identity = 71/166 (42.77%), Postives = 95/166 (57.23%), Query Frame = 2
Query:   56 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEKD---------------------------MSNNKQKQISVP-EIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQS 469
            ANGREEPLNHVEAERQRREKLNQRFY+LRAVVPN+SKMDKASLLGDAI+YI +L+ K++  E++K+                            SN      S+  EID +    D ++RV C   DHP +  M+   E  +    +++S   D +I   +++  S
Sbjct:  407 ANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQQAESDKEEIQKKLDGMSKEGNNGKGCGSRAKERKSSNQDSTASSIEMEIDVKIIGWDVMIRVQCGKKDHPGARFMEALKELDLEVNHASLSVVNDLMIQQATVKMGS 572          
BLAST of CF832981 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.257e-26
Identity = 67/160 (41.88%), Postives = 94/160 (58.75%), Query Frame = 2
Query:   56 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEKDMSNNKQKQISVP-------------------------EIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQ 460
            ANGREEPLNHVEAERQRREKLNQRFYALRAVVPN+SKMDKASLLGDAI YI +L+ K+   E+EK    N+ +++ +                          EI+ +    DA++RV     +HP + +M    + ++    +++S   D +I   +++
Sbjct:  444 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQIKNQLEEVKLELAGRKASASGGDMSSSCSSIKPVGMEIEVKIIGWDAMIRVESSKRNHPAARLMSALMDLELEVNHASMSVVNDLMIQQATVK 603          
BLAST of CF832981 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.434e-23
Identity = 62/157 (39.49%), Postives = 94/157 (59.87%), Query Frame = 2
Query:   56 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEK---DMSNNKQKQI-----SVPEI-DFQPR-------------HEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQ 460
            A+GR++PLNHVEAER RREKLN RFYALRAVVPN+SKMDK SLL DA+ YI +L+ K   +E EK   ++  N+ K+I     ++P +  ++ +              +DA+VRV    D HP + +M    + ++    +++S   D +I   +++
Sbjct:  335 AHGRDKPLNHVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENVELEKHAIEIQFNELKEIAGQRNAIPSVCKYEEKASEMMKIEVKIMESDDAMVRVESRKDHHPGARLMNALMDLELEVNHASISVMNDLMIQQANVK 491          
BLAST of CF832981 vs. ExPASy Swiss-Prot
Match: BH014_ARATH (Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.728e-20
Identity = 58/159 (36.48%), Postives = 80/159 (50.31%), Query Frame = 2
Query:   77 LNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLE--------TEKDMSNNKQKQISVPEIDFQPRH-------------------EDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSG 472
            L+HVEAE+QRREKLN RFYALRA+VP +S+MDKASLL DA++YI  L+ KI  LE        TE D  +N     S   +++Q                      E+A++RV     +HP S++M    E     Q +N S     ++    +    G
Sbjct:  248 LSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKIDDLETEIKKMKMTETDKLDNSSSNTSPSSVEYQVNQKPSKSNRGSDLEVQVKIVGEEAIIRVQTENVNHPTSALMSALMEMDCRVQHANASRLSQVMVQDVVVLVPEG 406          
BLAST of CF832981 vs. ExPASy Swiss-Prot
Match: TT8_ARATH (Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 38/110 (34.55%), Postives = 64/110 (58.18%), Query Frame = 2
Query:   71 EPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEKDMSNNKQ----KQISVPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSE 388
            E L+HV AER+RREKLN++F  LR++VP ++KMDK S+LGD I Y+  L+ ++  LE       +K+    K+ +  E++      D ++ + C   D  +  +++   E
Sbjct:  360 EDLSHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHHEQQHKRTRTCKRKTSEEVEVSIIENDVLLEMRCEYRDGLLLDILQVLHE 469          
BLAST of CF832981 vs. ExPASy Swiss-Prot
Match: BH025_ARATH (Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 45/139 (32.37%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   80 NHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEKD----------------MSNNKQ----------KQISVPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNV 418
            +H+ AER+RREKL QRF AL A+VP + KMDKAS+LGDA+ +I  LQ ++  LE +K                 + +N Q            + +PEI+ +   ED ++++ C      ++ +M    +  I+   S+V
Sbjct:  152 DHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQERVGELEEQKKERRLESMVLVKKSKLILDDNNQSFSSSCEDGFSDLDLPEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSV 290          
The following BLAST results are available for this feature:
BLAST of CF832981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
BH003_ARATH6.852e-4967.86Transcription factor bHLH3 OS=Arabidopsis thaliana... [more]
AIB_ARATH6.428e-3956.55Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
BH013_ARATH3.900e-3653.24Transcription factor bHLH13 OS=Arabidopsis thalian... [more]
BH004_ARATH8.708e-2843.21Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
ATR2_ARATH3.309e-2742.77Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
RAP1_ARATH1.257e-2641.88Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
BH028_ARATH8.434e-2339.49Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
BH014_ARATH8.728e-2036.48Transcription factor bHLH14 OS=Arabidopsis thalian... [more]
TT8_ARATH6.059e-1334.55Transcription factor TT8 OS=Arabidopsis thaliana G... [more]
BH025_ARATH7.913e-1332.37Transcription factor bHLH25 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832981 ID=CF832981; Name=CF832981; organism=Citrus sinensis; type=EST; length=757bp
TGATTCATCACCTCTGGGCGATGATCGGAAACCTAGGAAGAGAGGAAGAA
AGCCTGCAAATGGGAGAGAAGAGCCGTTGAATCATGTTGAAGCAGAGCGG
CAGAGGCGGGAGAAGCTTAACCAGCGATTCTATGCTTTAAGAGCTGTTGT
CCCTAATATCTCTAAGATGGACAAAGCCTCTCTGCTTGGTGATGCCATTA
CCTATATCACTGACCTCCAGATGAAAATCAGGGTTTTGGAGACAGAGAAG
GATATGTCAAACAATAAACAAAAGCAGATTTCTGTGCCAGAGATTGATTT
TCAGCCCAGACACGAGGATGCAGTTGTGCGGGTGAGCTGTCCTCTGGACG
ACCACCCGGTTTCAAGTGTCATGAAAACATTCAGTGAACATCAAATTGTA
GCTCAAGAGTCTAATGTTTCTACAACGGAAGACAAGGTTATCCATACATT
TTCCATTCAGACTCAAAGTGGTGCTTCTGAGCAGTTAAAAGAGAAACTAC
TTGCTGCCCTTTCTAAATGATGTGATTGTAAATTAAGTTGTGTTTATGAG
GTGCTCTTTCTGTGTGCTGCTGCTGTGCATCTCCATGTCAGAAAAGATTC
TGTGGCTGGCATATTTCTTTGCATTAAAGATCTTTATTCTATAATTTCTA
ACTTCAAAACAAGGTTGAATGAATTTGTTGTGTTCTTTGAATGTTGAGTT
GTGTGAAATATGATGAATCTATACGAATCAGGTTTGATTTTAAAAAAAAA
AAAAAAA
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