CF833070

Overview
NameCF833070
Unique NameCF833070
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3362 contig Csv1_Contig3362:741..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_ARATH (Probable phenylalanyl-tRNA synthetase beta chain OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 7.880e-85
Identity = 150/215 (69.77%), Postives = 181/215 (84.19%), Query Frame = 2
Query:   17 TKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIG 661
            TKNVFIECTATDLTKAKIVLNTMVT FSE+C RK+++EPVEV Y DG+SY+YPDL+ Y+MEV LS+I  +IGVSL+ E+VTSLL RMQL AE++ S +NQ  I V VPP+RSDVLHPCDVMEDVAIAYG+NNIP RKPAS+KPL LNE +DL+R+EIAM  +TEV+TW+LCS KE   MLNR+   S  +VGNPR++DFE +R  LMPG+LKT+G
Sbjct:  249 TKNVFIECTATDLTKAKIVLNTMVTTFSEFCARKFEIEPVEVTYDDGKSYIYPDLAVYDMEVPLSFITDSIGVSLKVEQVTSLLTRMQLQAEQAKSSDNQCAIKVHVPPSRSDVLHPCDVMEDVAIAYGFNNIPTRKPASIKPLTLNELTDLLRIEIAMCVYTEVVTWLLCSHKENFAMLNREDVNSAVIVGNPRSADFEAMRRALMPGLLKTVG 463          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_DROME (Probable phenylalanyl-tRNA synthetase beta chain OS=Drosophila melanogaster GN=CG5706 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.022e-52
Identity = 107/218 (49.08%), Postives = 145/218 (66.51%), Query Frame = 2
Query:   17 TKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTI 658
            TKNVFIECTATD TKAK+VL+T+V +FSE+C +K+ VEP +VV  DG    YP+L      +S+   N  IG+   AE++  +L RM L A+         ++ V +PPTR DV+H CD+ EDVAIAYGYNNI K  PA +   K   LN+ ++ +R ++A  GFTE LT+ LCS  +I   LN+  D   AV +GNP+T +F+VVRTTL+PG+LKT+
Sbjct:  248 TKNVFIECTATDRTKAKVVLDTIVCLFSEHCAQKFTVEPCDVVQPDGSVISYPELEVREERISVKRANAYIGIDEPAEKLADMLTRMYLEAKVDGD-----SLVVKIPPTRHDVIHACDIYEDVAIAYGYNNIKKSLPAFMQIAKQFPLNKLTEQLREQVAQAGFTEALTFTLCSRDDIGRKLNKNIDALPAVHIGNPKTLEFQVVRTTLLPGLLKTL 460          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_HUMAN (Phenylalanyl-tRNA synthetase beta chain OS=Homo sapiens GN=FARSB PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 4.825e-50
Identity = 99/218 (45.41%), Postives = 144/218 (66.06%), Query Frame = 2
Query:   17 TKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS---VKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTI 658
            T+N+FIECT TD TKAKIVL+ +VT+FSEYC+ ++ VE  EVV+ +G+S+ +P+L+     V    IN  +G+    E +  LL RM L +E    GN    I + +PPTR+D++H CD++ED AIAYGYNNI    P +        LN+ ++L+R ++A  GFTE LT+ LCS ++I+  L      + AV + NP+T++F+V RTTL+PG+LKTI
Sbjct:  248 TRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGN---QIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTI 462          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_PONAB (Phenylalanyl-tRNA synthetase beta chain OS=Pongo abelii GN=FARSB PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.968e-49
Identity = 97/218 (44.50%), Postives = 144/218 (66.06%), Query Frame = 2
Query:   17 TKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS---VKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTI 658
            T+N+FIECT TD TKAKIVL+ +VT+FSEYC+ ++ VE  EVV+ +G+S+ +P+L+     V    IN  +G+    E +  LL RM L +E    GN    I + +PPTR+D++H CD++ED AIAYGY+NI    P +        LN+ ++L+R ++A  GFTE LT+ LCS ++I+  L      + AV + +P+T++F+V RTTL+PG+LKTI
Sbjct:  248 TRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGN---QIEIEIPPTRADIIHACDIVEDAAIAYGYSNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISSPKTAEFQVARTTLLPGLLKTI 462          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_MOUSE (Phenylalanyl-tRNA synthetase beta chain OS=Mus musculus GN=Farsb PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.968e-49
Identity = 101/218 (46.33%), Postives = 142/218 (65.14%), Query Frame = 2
Query:   17 TKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS---VKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTI 658
            T+N+FIECT TD TKAKIVL+ +VT+FSE+C+ ++ VE VEVV  +G+S  +P+L      V    IN  +G+      +  LL RM L +E    GN    I V +PPTR+DV+H CD++ED AIAYGYNNI    P +        LN+ ++L+RL++A  GFTE LT+ LCS ++I+  L      + AV + NP+T++F+V RTTL+PG+LKTI
Sbjct:  248 TRNIFIECTGTDFTKAKIVLDIIVTMFSEHCENQFTVEAVEVVSPNGKSSTFPELPYRKEMVRADLINKKVGIRETPANLAKLLTRMCLKSEVIGDGN---QIEVEIPPTRADVIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRLDMAAAGFTEALTFALCSQEDIADKLGLDISATKAVHISNPKTAEFQVARTTLLPGLLKTI 462          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_CAEEL (Phenylalanyl-tRNA synthetase beta chain OS=Caenorhabditis elegans GN=frs-2 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 5.899e-48
Identity = 103/219 (47.03%), Postives = 148/219 (67.58%), Query Frame = 2
Query:   17 TKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYAD-GRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS---VKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTI 658
            TKNVFIE TATD  KA +VL+T+VT+FS+YC + + +E VEVVY + G   +YP LS   M V+   IN  IG++L+ EE+ +LLN+M L AE +A    +  + ++VPPTR D+LH CD+ EDV +A+GYNN+  + P S        +N+  D +R+EIA  G+TE L + LCS  +IS+ L +    S AV +GNP+T +F+V RT+L+PG+LKT+
Sbjct:  249 TKNVFIEATATDKQKAFVVLDTIVTLFSQYCAKPFTIEQVEVVYEETGVKELYPLLSYREMTVTTPEINTKIGINLKDEEMATLLNKMSLKAEVAA----KETLKIVVPPTRHDILHACDIAEDVGVAFGYNNLITKLPESNTVAVAFPINKLCDNLRIEIAAAGWTEALNFALCSRDDISSKLRQPDALSHAVHIGNPKTLEFQVARTSLLPGLLKTL 463          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_DICDI (Phenylalanyl-tRNA synthetase beta chain OS=Dictyostelium discoideum GN=pheSB PE=3 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.478e-46
Identity = 97/220 (44.09%), Postives = 148/220 (67.27%), Query Frame = 2
Query:   17 TKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSY-VYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKP-----ASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTI 658
            TKNVFIE TA D TKA IVLNTM+T+FSEYCK+ + +E VEV+ ADG+S  +YP +    +   + YIN + G+++   ++ +LL RM L ++ S   +++ +I V VP TRSD++H CD+MEDVAI YGY+N+ K  P       V+P  +N+ S+L+  EIA+ GFTE++T++LC +++  T LN+  D S+  + N  + +F  VRT L+  +LK++
Sbjct:  251 TKNVFIEVTANDRTKANIVLNTMLTMFSEYCKQPFTMEQVEVIDADGKSTGLYPQIQEKQINAQVDYINKSAGINITPNDMVTLLKRMSLQSKLS---DDEKSIIVDVPVTRSDIMHACDIMEDVAIGYGYDNLKKEIPNCNTIGRVQP--INKLSELLANEIALAGFTEIMTFVLCQNRDNFTALNKADDGSSVKISNAVSEEFTEVRTNLVSTLLKSV 465          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_YEAST (Phenylalanyl-tRNA synthetase beta chain OS=Saccharomyces cerevisiae GN=FRS1 PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 3.029e-44
Identity = 95/221 (42.99%), Postives = 141/221 (63.80%), Query Frame = 2
Query:   17 TKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYA-DGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS-----VKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTI 658
            T+N+ I+ TATD TKA+IVLN + T+FS YC   + VEPVE+V   +G+S + P+ +   M+VS+ YIN  +G+   A+E+   L +M LHA +S    +   ++V +P TR D+LH CD+MED A+ YG+NN+PK +  S      KPL +N+ SD+ R+  +   + EVL   LCS  E    L +  +   AV + NP+T +++VVRTTL+PGILKT+
Sbjct:  237 TRNILIDITATDKTKAEIVLNILTTMFSRYCDEPFTVEPVEIVSEHNGQSRLAPNFNDRIMDVSIKYINSCLGLDQSADEIAHCLKKMSLHAVQSKEDKD--ILHVDIPVTRPDILHACDIMEDAAVGYGFNNLPKGEKLSNANFIAKPLPINKVSDIFRVASSQATWVEVLPLTLCSHDENFKFLRQSDNGDLAVKLANPKTLEYQVVRTTLLPGILKTV 455          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_SCHPO (Phenylalanyl-tRNA synthetase beta chain OS=Schizosaccharomyces pombe GN=SPAC23A1.12c PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.749e-44
Identity = 95/220 (43.18%), Postives = 146/220 (66.36%), Query Frame = 2
Query:   17 TKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYA-DGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTI 658
            T+++FI+ TATD TK +IV+N M T+FS YC+  + +EPV ++   +G + V P+L+    +  + Y+N   G+SL  +E+  LL RM L A+ +   N+   + V VPP R+D+LH CD+MED+ IAYGY+N+    PA      KP  +N  +D++R E+A  G++EV+ +ILCS  E    L R+TD+S AV + NP+T +F+VVR++L+PGILKT+
Sbjct:  235 TRDIFIDVTATDKTKLEIVVNMMTTMFSCYCEEPFTIEPVNIISEHNGCTRVTPNLNPTCFKADIDYLNEACGLSLPEDEICHLLTRMMLTAKPNP--NDSKTLLVYVPPLRADILHQCDIMEDLGIAYGYDNLKHTYPAHSVTFGKPFEVNRLADIIRNEVAYAGWSEVMPFILCSHDENYAWL-RKTDDSKAVQLANPKTLEFQVVRSSLLPGILKTV 451          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_CANAL (Phenylalanyl-tRNA synthetase beta chain OS=Candida albicans GN=FRS1 PE=2 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 1.504e-43
Identity = 91/220 (41.36%), Postives = 143/220 (65.00%), Query Frame = 2
Query:   17 TKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYA-DGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS----VKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTI 658
            TKNV+I+ T TD TK +IV+N +V +FS YCK  +++EPV+++   +  + V P+++    +  +SYIN  +G++   EE++ LL +M L A  S    +   ++V +P TRSD+LH CD+MEDVAI YGY+N+ K KP +      PL +N+ +D++RL  +  G+ EV+   L S  E    L ++ D + AV + NP+T +++VVRTTL+PGILKT+
Sbjct:  236 TKNVWIDVTGTDRTKTEIVINQLVAMFSRYCKEPFEIEPVQIISEHNNETRVCPNITPRTAKAEISYINSCVGLNYSGEEISKLLKKMSLDATPSTEERDI--LDVKIPITRSDILHQCDIMEDVAIGYGYDNLKKTKPQAESLVAAPLPVNKVADILRLASSQAGYLEVMPLTLSSHDENFAWLKQKDDGTKAVKLENPKTIEYQVVRTTLLPGILKTV 453          
The following BLAST results are available for this feature:
BLAST of CF833070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
SYFB_ARATH7.880e-8569.77Probable phenylalanyl-tRNA synthetase beta chain O... [more]
SYFB_DROME3.022e-5249.08Probable phenylalanyl-tRNA synthetase beta chain O... [more]
SYFB_HUMAN4.825e-5045.41Phenylalanyl-tRNA synthetase beta chain OS=Homo sa... [more]
SYFB_PONAB6.968e-4944.50Phenylalanyl-tRNA synthetase beta chain OS=Pongo a... [more]
SYFB_MOUSE6.968e-4946.33Phenylalanyl-tRNA synthetase beta chain OS=Mus mus... [more]
SYFB_CAEEL5.899e-4847.03Phenylalanyl-tRNA synthetase beta chain OS=Caenorh... [more]
SYFB_DICDI2.478e-4644.09Phenylalanyl-tRNA synthetase beta chain OS=Dictyos... [more]
SYFB_YEAST3.029e-4442.99Phenylalanyl-tRNA synthetase beta chain OS=Sacchar... [more]
SYFB_SCHPO6.749e-4443.18Phenylalanyl-tRNA synthetase beta chain OS=Schizos... [more]
SYFB_CANAL1.504e-4341.36Phenylalanyl-tRNA synthetase beta chain OS=Candida... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02O16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833070 ID=CF833070; Name=CF833070; organism=Citrus sinensis; type=EST; length=661bp
CTGCAATCACCCCTTAACAAAGAACGTGTTCATTGAATGTACTGCCACTG
ATCTGACAAAGGCCAAGATTGTTTTAAACACAATGGTAACAATTTTTTCT
GAGTATTGCAAGAGAAAATACCAAGTGGAACCAGTTGAAGTGGTCTATGC
TGATGGGAGGTCATATGTTTATCCTGATCTGTCAGCCTACAATATGGAAG
TTTCTTTGTCATATATTAATCATACAATTGGAGTCTCTTTGGAGGCAGAA
GAGGTTACTAGTTTATTGAACAGAATGCAATTGCATGCAGAGCGATCTGC
ATCAGGTAATAATCAATGGAATATAAATGTACTTGTTCCTCCAACGAGAA
GTGATGTTCTGCACCCATGTGATGTTATGGAGGATGTTGCAATTGCTTAT
GGGTACAACAACATTCCTAAGAGAAAGCCTGCATCTGTGAAACCATTGGC
CTTAAACGAGTTTAGTGACCTTATGAGGTTGGAGATTGCAATGAATGGAT
TCACGGAGGTCTTGACATGGATTTTATGCTCTAGCAAAGAGATTTCAACC
ATGCTTAATCGTCAAACTGACGAATCAACTGCTGTCGTTGGAAATCCTCG
TACATCTGATTTTGAGGTTGTTAGAACGACCTTGATGCCTGGTATATTGA
AAACCATTGGA
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