CF833079

Overview
NameCF833079
Unique NameCF833079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2024 contig Csv1_Contig2024:600..1272. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF833079 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15
Identity = 55/141 (39.01%), Postives = 71/141 (50.35%), Query Frame = -2 
Query:  251 DFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPVESTPPVSPGPPKILTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRPCDLPIARRNSLHRFLEKRKDRIVARAPYQVNGSAGAPDKPADSKSWL 673
            DF A+KA E++ LA+ GS+ S           A+  N+ +A   K    S  PV         EP   + P                  P S  C+LPIARR SLHRFLEKRKDRI ++APYQ++GSA A  KP  + +WL
Sbjct:  133 DFSAEKAKEVIDLANKGSAKSFTC------FTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEP---IQPN-----------------PASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEASSKPT-NPAWL 246
[Close]
BLAST of CF833079 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 52/149 (34.90%), Postives = 70/149 (46.98%), Query Frame = -2 
Query:  236 DFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPVESTPPVSPGPPKILTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRPC-DLPIARRNSLHRFLEKRKDRIVARAPYQVNGSAGAPDKP--ADSKSWLGLAAQ 673
            DF A+KA E++ LAS G++                 NS A                   K  T+   ++   +N +P+       E  Q    P  +LPIARR SLHRFLEKRKDR+ ++APYQ+   A A   P    + SWLGLAA+
Sbjct:  140 DFSAEKAKEVINLASKGTA-----------------NSLA-------------------KNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSNPQTTGNMSWLGLAAE 252
The following BLAST results are available for this feature:
BLAST of CF833079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TI10B_ARATH8.918e-1539.01Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10A_ARATH1.205e-1134.90Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02O22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833079 ID=CF833079; Name=CF833079; organism=Citrus sinensis; type=EST; length=674bp
TTTTTTTTTTTTTTTTGGGATTACATTAACTAAATTTTCAATAAAGAAGT
TAATTACATAAACTATTGGTAAGAAGAATGATCGTTAGATCTATGGTGGG
CTCATCAAAACCCAACCTAAAAGAAGATGGAAGATGAAGAAAAACGAAGC
AAGGTTTATGTTTGCCAAAAAGACGATGACCGGCCAATAATCAGTCCCTA
AAACTGGATGCAATTTGCACAAACTACTGTGAAGTTTGAGCAGCCAGGCC
AAGCCATGACTTGCTATCAGCGGGCTTGTCTGGAGCCCCTGCTGAGCCAT
TCACTTGGTACGGTGCTCTTGCAACAATCCTGTCTTTTCTCTTCTCCAAG
AACCTGTGGAGTGAATTTCTCCTTGCAATTGGTAGATCACAAGGTCTTGA
GGGAGGTTGAGCGCACTCTGGAATTAGATTGTTGCCAAAGTTAGGAATGC
TATTTGATCGAGGAGGAACCGAGCAACTAGGCTCTGTTAGAATTTTTGGG
GGGCCAGGAGAAACCGGGGGAGTTGATTCAACTGGACTTTTGGGTAAACT
AGCAGCAAAAGAGTTGTAACCCTGGGCCGGCAGTTGCATAGGAGGATATG
CGGTACCATGGCTCAGTGAGCTCCCGTTGCTTGCTAATTGCATGATTTCA
TTTGCTTTATCAGCAGGAAAATCC
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