CF833084

Overview
NameCF833084
Unique NameCF833084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1972 contig Csv1_Contig1972:55..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKIL5_ARATH (KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 8.703e-80
Identity = 144/206 (69.90%), Postives = 167/206 (81.07%), Query Frame = 1
Query:   85 MGERLTPGSYFQYPPSGVHASPHRSSSLPLDRERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHL 702
            M ER++PGS+FQYP SG  ASP+RS   P DRERYL ELL ERQKLGPF+QV+P C RLL+ EIRR++    SF D +R+EH SPFRSLGQP    +DLEG S MQ EEN HLQR +PF+ P  +GW G+PG+P  P+VK+VIRLDVPVDKYP++NFVGRILGPRGNSLKRVE  T CRVFIRGRGSVKD++KEEKLK KPGYEHL
Sbjct:   11 MEERISPGSFFQYPLSGFRASPNRSPCPPSDRERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVS----SFPDLDRYEHGSPFRSLGQPTNGKLDLEGWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHL 212          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKIL4_ARATH (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.226e-49
Identity = 110/205 (53.66%), Postives = 136/205 (66.34%), Query Frame = 1
Query:  109 SYFQYPPSGVHASPHRSSSLPLDRERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGYNPS--FVDHERFEHDSPFRSLGQPNGRPM----DLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            +Y  + PS   +   R+ S  +D + Y+++LLAE QKLGPF+QVLP+CSRLL+QEI RITG  P+  F D +R  H SP   +  PN         L G + +  E  G    MA       M WQG P  P++  VKR++RLD+PVD YPNFNFVGR+LGPRGNSLKRVEA T CRV+IRG+GS+KD  KEEKLK KPGYEHLN
Sbjct:    6 NYNNFSPSRAASPQIRTPSSDVDSQ-YISQLLAEHQKLGPFMQVLPICSRLLNQEIFRITGMMPNQGFTDFDRLRHRSP-SPMASPNLMSNVSGGGLGGWNGLPPERIGGPHGMA-------MEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHLN 201          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKIL3_ARATH (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.945e-49
Identity = 102/190 (53.68%), Postives = 126/190 (66.32%), Query Frame = 1
Query:  142 ASPHRSSSLPLDRERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGY--NPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            ASP   S+  +D  +YL ELLAE QKL PF+QVLP+CSRLL+QE+ R++G   N  F D +R  H SP           +   GL       NG  Q         +M WQG PG P++  VKR++RL++PVD YPNFNFVGR+LGPRGNSLKRVEA T CRVFIRG+GS+KD  KE+KL+ +PGYEHLN
Sbjct:   17 ASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQEMFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGW----NGLSQERLSGTPGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHLN 202          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKIL1_ARATH (KH domain-containing protein At4g26475 OS=Arabidopsis thaliana GN=At4g26475 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.402e-45
Identity = 99/211 (46.92%), Postives = 129/211 (61.14%), Query Frame = 1
Query:  106 GSYFQYPPS-----GVHASPHRSSSLP------LDRERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            G +  YPP          SP+ S  L       +++E+YL+ELLAER KL PF+ VLP   RL++QEI R+T    + +   RF+H SP  S G       D+ G ++    E           + P+  W   PG  +  +VKR IR+D+PVDKYPN+NFVGR+LGPRGNSLKRVEA T+CRV IRGRGS+KD IKE+ ++ KPGYEHLN
Sbjct:   23 GRFVTYPPPLSVPPSAPQSPNFSGGLRSQPSFLVEQEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLLENALSQSRFDHPSPLASGGIFQNSRADMNGWASQFPSERS-------VSSSPAPNWLNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHLN 226          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKIL2_ARATH (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.187e-44
Identity = 104/214 (48.60%), Postives = 131/214 (61.21%), Query Frame = 1
Query:   88 GERLTPGSYFQYPPSGVHASPHRS------SSLPLDRERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGY--NPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            G  +T  S    PPS    SP+ S      SS+ +++E+YL+ELLAER KL PF+ VLP   RLL+QEI R+T    N + +     +H SP  S G       D+ G ++    E     R  P  + P   W   PG  +  + KR IR+D+PVD YPNFNFVGR+LGPRGNSLKRVEA T+CRV IRGRGS+KD IKEE ++ KPGYEHLN
Sbjct:   27 GRFMTYSSSLSVPPSAPQ-SPNYSGGLRSQSSVFVEQEKYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLENATVLSQSGLDHPSPLASGGIFQNARADMNGWASQFPSE-----RSVP--SSPGPNWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLN 232          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKI_RAT (Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  493 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKI_PIG (Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  493 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKI_MOUSE (Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  493 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKI_HUMAN (Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  493 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKI_HORSE (Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  493 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
The following BLAST results are available for this feature:
BLAST of CF833084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
QKIL5_ARATH8.703e-8069.90KH domain-containing protein At1g09660 OS=Arabidop... [more]
QKIL4_ARATH1.226e-4953.66KH domain-containing protein At3g08620 OS=Arabidop... [more]
QKIL3_ARATH7.945e-4953.68KH domain-containing protein At2g38610 OS=Arabidop... [more]
QKIL1_ARATH1.402e-4546.92KH domain-containing protein At4g26475 OS=Arabidop... [more]
QKIL2_ARATH1.187e-4448.60KH domain-containing protein At5g56140 OS=Arabidop... [more]
QKI_RAT4.701e-1754.93Protein quaking OS=Rattus norvegicus GN=Qki PE=1 S... [more]
QKI_PIG4.701e-1754.93Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1[more]
QKI_MOUSE4.701e-1754.93Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1[more]
QKI_HUMAN4.701e-1754.93Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1[more]
QKI_HORSE4.701e-1754.93Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_03A01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833084 ID=CF833084; Name=CF833084; organism=Citrus sinensis; type=EST; length=706bp
CCCCCATCTCCACTCTTTAAGCCATCTCCACCTCCACCGCCTCTCTCTCC
TTCCCCTTCCGACCACCACCATCATCATAATCGAATGGGAGAGAGACTCA
CCCCTGGAAGTTACTTCCAGTACCCTCCTTCAGGAGTTCACGCTTCTCCT
CATAGGTCTTCTTCTTTGCCTTTAGATCGTGAAAGGTATTTGGCTGAATT
ATTGGCAGAAAGGCAAAAGTTAGGACCATTTGTCCAAGTTTTGCCTCTAT
GCAGCAGGCTTCTCAGTCAAGAAATCAGACGAATAACGGGTTACAATCCA
AGTTTTGTTGATCATGAAAGGTTTGAGCATGATAGCCCATTTAGGTCATT
AGGTCAGCCAAATGGAAGACCAATGGATTTGGAGGGTTTGTCTGCAATGC
AAACTGAGGAAAATGGGCATCTTCAAAGAATGGCCCCTTTTCAAACTCCT
CCTTCAATGGGCTGGCAAGGTATTCCTGGAATTCCAACCACACCTGTTGT
AAAGAGAGTTATTAGACTTGATGTTCCTGTGGATAAATATCCAAATTTTA
ATTTTGTCGGCCGGATTTTGGGACCGCGTGGGAACTCGCTCAAAAGAGTC
GAAGCCATGACAGAATGTAGGGTGTTCATTAGAGGCCGGGGTTCAGTCAA
GGATTCGATAAAGGAAGAAAAACTTAAAGATAAACCTGGATATGAGCATC
TTAATG
back to top