CF833982

Overview
NameCF833982
Unique NameCF833982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF833982_ssr214 microsatellite CF833982_ssr214:214..228. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF833982 vs. ExPASy Swiss-Prot
Match: U497A_ARATH (UPF0497 membrane protein At2g36330 OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.466e-58
Identity = 111/161 (68.94%), Postives = 129/161 (80.12%), Query Frame = -2
Query:  270 ILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQXXXXXXXXXXXXXATRVDDWQSNWGKDEFTEMASASVAMSFLAFIAFALSSVISGYNLFNHDS 752
            IL+RS+ E  + F+ LGFRL EVVL+LISFS+MAADKT+GWSGDSFDRY+EYR+CLSVNV+AFVYS FQA DLAY+L K KH+I +HLR  F+F +DQ              TRVDDW SNWGKDEFTEMASAS+AMSFLAF+AFA SS+ISGYNLFN  S
Sbjct:  122 ILRRSRREEVVKFSALGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYHLVKEKHLISHHLRPLFEFIIDQVLAYLLMSASTAAVTRVDDWVSNWGKDEFTEMASASIAMSFLAFLAFAFSSLISGYNLFNQGS 282          
BLAST of CF833982 vs. ExPASy Swiss-Prot
Match: U49D7_ARATH (UPF0497 membrane protein At5g62820 OS=Arabidopsis thaliana GN=At5g62820 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.154e-46
Identity = 93/160 (58.13%), Postives = 116/160 (72.50%), Query Frame = -2
Query:  270 LKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQXXXXXXXXXXXXXATRVDDWQSNWGKDEFTEMASASVAMSFLAFIAFALSSVISGYNLFNHDS 749
            + R++ +  +    LGFR+ EV+L +ISFS+MAADKTQGWSGDS+DRY+EYRYCL+VNVIAFVYS F+A D A Y+AK  ++I       F F MDQ             ATRVDDW SNWGKDEFT+MA+AS+A+SFLAF AFA+S++IS Y LF H S
Sbjct:  137 VNRARGDDLVSLTALGFRITEVILCVISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACDAACYIAKESYMINCGFHDLFVFSMDQLLAYLLMSASSCAATRVDDWVSNWGKDEFTQMATASIAVSFLAFGAFAVSALISSYRLFTHAS 296          
BLAST of CF833982 vs. ExPASy Swiss-Prot
Match: U49A7_ARATH (UPF0497 membrane protein At5g40300 OS=Arabidopsis thaliana GN=At5g40300 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.471e-34
Identity = 72/154 (46.75%), Postives = 101/154 (65.58%), Query Frame = -2
Query:  285 KRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQXXXXXXXXXXXXXATRVDDWQSNWGKDEFTEMASASVAMSFLAFIAFALSSVISGYNL 746
            + SK+ + +  A LGFR+I  V  L+SFSVM +D+ +GW+ DSF  Y+E+R+CL+ NVI FVYSGF   DL Y L+      R++LR   +F +DQ             + RVDDWQSNWG D+F ++A ASVA+S+++F+AFA  S+ SGY L
Sbjct:  111 RESKWASLIRKALLGFRVIAFVSCLVSFSVMVSDRDKGWAHDSFYNYKEFRFCLAANVIGFVYSGFMICDLVYLLSTSIRRSRHNLRHFLEFGLDQMLAYLLASASTSASIRVDDWQSNWGADKFPDLARASVALSYVSFVAFAFCSLASGYAL 264          
BLAST of CF833982 vs. ExPASy Swiss-Prot
Match: U497R_ORYSJ (UPF0497 membrane protein Os02g0134500 OS=Oryza sativa subsp. japonica GN=Os02g0134500 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.517e-27
Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = -2
Query:  273 ILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQXXXXXXXXXXXXXATRVDDWQSNWGKDEFTEMASASVAMSFLAFIAFALSSVISGYNLFNHD 752
            IL R +  A L    L  R+   +L L + +V+AAD  +G++ DS+  Y + RY  +VNVI FVYS  Q + LA  + + KH+        FDFFMDQ               RV DW  NWG D F +MA++S+A+SF+AF+ FA+S++IS YNLF  D
Sbjct:  148 ILLRKRPTAVLQRTALVARVAAALLCLAALAVLAADSRKGFALDSYSNYSQLRYSEAVNVIGFVYSVLQFFVLADLMRRNKHLNPRRKGDYFDFFMDQVLAYLLISSSSSATARVGDWIDNWGSDPFPKMANSSIAISFMAFLVFAISALISAYNLFRRD 307          
BLAST of CF833982 vs. ExPASy Swiss-Prot
Match: U497F_MAIZE (UPF0497 membrane protein 15 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.511e-27
Identity = 64/160 (40.00%), Postives = 89/160 (55.62%), Query Frame = -2
Query:  273 ILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQXXXXXXXXXXXXXATRVDDWQSNWGKDEFTEMASASVAMSFLAFIAFALSSVISGYNLFNHD 752
            IL R +  A +  A L  R     L L + +V+A+D  +GW+ DS+  Y ++RY  +VNV+ F+YS FQ   LA  + + KH+I +  R  FDF MDQ               R  D   NWG D F  MA+ S+A+SF+AF+ FA+ S+IS YNLF  D
Sbjct:  142 ILSRKRRAAVMQRAALLARAAAAGLCLAALAVLASDTRRGWARDSYSNYAQFRYSEAVNVVGFLYSVFQFVALAELMRRNKHLIPHPKRDLFDFTMDQVVAYLLISSSSSATARASDLIENWGSDSFPSMANGSIAISFVAFVVFAICSLISAYNLFRRD 301          
BLAST of CF833982 vs. ExPASy Swiss-Prot
Match: U4975_SORBI (UPF0497 membrane protein Sb04g002820 OS=Sorghum bicolor GN=Sb04g002820 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.112e-26
Identity = 66/160 (41.25%), Postives = 87/160 (54.37%), Query Frame = -2
Query:  273 ILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQXXXXXXXXXXXXXATRVDDWQSNWGKDEFTEMASASVAMSFLAFIAFALSSVISGYNLFNHD 752
            IL R +  A +    L  R     L L + +V+AAD  +GW+ DS+  Y ++RY  +VNVI F+YS FQ   L   + + KH+I +  R  FDF MDQ               RV D   NWG D F  MA+ S+A+SFLAF  FA+ S+IS YNLF  D
Sbjct:  292 ILSRKRRAAAMQRTALLARGAAAGLCLAALAVLAADTRKGWARDSYSNYTQFRYSEAVNVIGFIYSVFQFVALVELMRRNKHLIPHPKRDLFDFTMDQVLTYLLISSSSSATARVSDLIDNWGSDPFPSMANGSIAISFLAFAVFAICSLISAYNLFRRD 451          
BLAST of CF833982 vs. ExPASy Swiss-Prot
Match: U497G_MAIZE (UPF0497 membrane protein 16 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.205e-26
Identity = 63/160 (39.38%), Postives = 87/160 (54.37%), Query Frame = -2
Query:  273 ILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQXXXXXXXXXXXXXATRVDDWQSNWGKDEFTEMASASVAMSFLAFIAFALSSVISGYNLFNHD 752
            IL R +  A +  A L  R       L + +V+AAD  +GW+ DS+  Y ++RY  +VNV+ F+YS FQ   LA  + +  H+I +  R  FDF MDQ               R  D   NWG D F  MA+ S+A+SF+AF+ FA+ S+IS YNLF  D
Sbjct:  146 ILSRKRRAAVMQRAALLARAAAAGXXLAALTVLAADTRRGWARDSYSNYAQFRYSEAVNVVGFLYSVFQFVALAELMRRNTHLIPHPKRGLFDFTMDQVLAYLLISSSSSATARASDLTENWGSDSFPNMANGSIAISFVAFVVFAICSLISAYNLFRRD 305          
BLAST of CF833982 vs. ExPASy Swiss-Prot
Match: U497H_MAIZE (UPF0497 membrane protein 17 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.532e-19
Identity = 53/143 (37.06%), Postives = 78/143 (54.55%), Query Frame = -2
Query:  279 LGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQXXXXXXXXXXXXXATRVDDWQSNWGKDEFTEMASASVAMSFLAFIAFALSSVISGYNLFN 707
            L  RL   VLSL +FSV+A+ +T GW+GD + R+ +YRY ++VNVI F YS  Q+     +L   +   R         F+DQ             A+R D W S +G D F    + ++ +SF+AF+  AL++VIS  NLF+
Sbjct:  225 LALRLATAVLSLAAFSVIASARTSGWAGDYYARHLQYRYAVAVNVIVFAYSVAQSLGKIRHLVSPRFTFRTMSSYYCSLFLDQVLAYLLMSASSAAASRNDLWVSRFGTDAFVRKITGALWLSFVAFLVLALNAVISXANLFS 367          
BLAST of CF833982 vs. ExPASy Swiss-Prot
Match: U4974_SORBI (UPF0497 membrane protein Sb03g029220 OS=Sorghum bicolor GN=Sb03g029220 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.362e-16
Identity = 49/140 (35.00%), Postives = 77/140 (55.00%), Query Frame = -2
Query:  279 RLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQXXXXXXXXXXXXXATRVDDWQSNWGKDEFTEMASASVAMSFLAFIAFALSSVISGYNLFN 698
            RL   VLSL +FSV+A+ +T GW+GD +  + +YRY ++VNVI   YS  Q++     L   + + R         F+DQ             A+R D W S +G D F    ++++ +SF+AF+  AL+++IS  NLF+
Sbjct:  320 RLATAVLSLAAFSVIASARTSGWAGDYYAHHLQYRYAVAVNVIVCAYSIAQSFGEIRRLISPRFIFRSMSSYYCSLFLDQALAYLLMSASSAAASRNDLWVSRFGTDAFNRKITSALWLSFIAFLMLALNALISTANLFS 459          
BLAST of CF833982 vs. ExPASy Swiss-Prot
Match: N24_MEDTR (UPF0497 membrane protein N24 OS=Medicago truncatula GN=N24 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16
Identity = 62/171 (36.26%), Postives = 82/171 (47.95%), Query Frame = -2
Query:  294 RSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQ--------GWSGDSFD----------RYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQXXXXXXXXXXXXXATRVDDWQSNW---GKDEFTEMASASVAMSFLAFIAFALSSVISG 743
            +SK E +   A L  R+   V  LI+FSV+ A + +         W    F           ++ E+RY  + NVI FVYSG Q   L  YL   KH I   L+  F+  +DQ             AT     +  W   G D F EMA+ASV+MSFLAF AFAL+S++SG
Sbjct:   57 KSKKEVKWYVALLVIRVFAFVFCLIAFSVLGASEQRVLVSENLTNWYSSGFTIQTPYEFHWYKWDEFRYSFAANVIGFVYSGLQICHLVMYLITKKHTINPKLQGYFNVAIDQTLAYILMSASSSAATAAHLLKDYWLEHGADTFIEMANASVSMSFLAFGAFALASLVSG 227          
The following BLAST results are available for this feature:
BLAST of CF833982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
U497A_ARATH5.466e-5868.94UPF0497 membrane protein At2g36330 OS=Arabidopsis ... [more]
U49D7_ARATH2.154e-4658.13UPF0497 membrane protein At5g62820 OS=Arabidopsis ... [more]
U49A7_ARATH2.471e-3446.75UPF0497 membrane protein At5g40300 OS=Arabidopsis ... [more]
U497R_ORYSJ6.517e-2741.25UPF0497 membrane protein Os02g0134500 OS=Oryza sat... [more]
U497F_MAIZE8.511e-2740.00UPF0497 membrane protein 15 OS=Zea mays PE=2 SV=1[more]
U4975_SORBI1.112e-2641.25UPF0497 membrane protein Sb04g002820 OS=Sorghum bi... [more]
U497G_MAIZE7.205e-2639.38UPF0497 membrane protein 16 OS=Zea mays PE=2 SV=2[more]
U497H_MAIZE6.532e-1937.06UPF0497 membrane protein 17 OS=Zea mays PE=2 SV=1[more]
U4974_SORBI1.362e-1635.00UPF0497 membrane protein Sb03g029220 OS=Sorghum bi... [more]
N24_MEDTR3.034e-1636.26UPF0497 membrane protein N24 OS=Medicago truncatul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04K20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833982 ID=CF833982; Name=CF833982; organism=Citrus sinensis; type=EST; length=828bp
TTTTTTTTTTTTTTTTTATGTAAAATGGACAGTTAAAATTGGTAAATTCT
TTTTCNAATATTCATCATAAANATTAAAAAAAAAAAAANCTTTACCTTTA
TTTTCAANATTTTTGAGAAGAAAAATATATATTATCATAAGAAAGGAGCA
CTCCATACAAGAATGGAAAATCTTGGATTTGAACCCTCTTAATTCCCTTT
TTGCATTTCTTGAAAAATAAAATAAAATTAAATATGATGCACAGCAGCTG
TTGTATTCACGTGGCCTCATGAGTCATGGTTAAATAGGTTGTAACCTGAA
ATAACGGAGCTTAAGGCAAAGGCAATAAAAGCGAGGAAGGACATTGCGAC
TGAAGCACTAGCCATCTCAGTAAACTCATCCTTGCCCCAATTTGATTGCC
AGTCATCAACCCGAGTGGCTGCCGCTGATGACGCCGATATAAGAAGATAT
GCCAGTATCTGGTCCATAAAAAAATCAAAGGGTTGCCTGAGATGGTATCG
GATCACATGTTTTCCCTTGGCCAGATAGTAAGCTAGATCATATGCTTGAA
ATCCCGAATATACAAATGCAATAACGTTCACAGATAAACAGTACCTGTAT
TCTCTGTAACGATCAAAGGAATCGCCGCTCCAGCCCTGCGTCTTATCAGC
GGCCATAACAGAGAAAGAAATCAGACTCAAAACGACTTCGATTAACCTAA
ACCCTAAATTCGCAAACATCAGCCTCGCCTCAAACTTCGATCTCTTCAGT
ATCGACGCCACCGGCCCCGATCTCCCTCCTCCTACTCGGCCGGGTTCGGT
CTTCATCACAGAAGGCGTACCGTCTTCT
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