CF833983

Overview
NameCF833983
Unique NameCF833983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1055 contig Csv1_Contig1055:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833983 vs. ExPASy Swiss-Prot
Match: U497A_ARATH (UPF0497 membrane protein At2g36330 OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.897e-38
Identity = 77/108 (71.30%), Postives = 94/108 (87.04%), Query Frame = 2
Query:  440 ILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISAS 763
            IL+RS+ E  + F+ LGFRL EVVL+LISFS+MAADKT+GWSGDSFDRY+EYR+CLSVNV+AFVYS FQA DLAY+L K KH+I +HLR  F+F +DQ+LAYLL+SAS
Sbjct:  122 ILRRSRREEVVKFSALGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYHLVKEKHLISHHLRPLFEFIIDQVLAYLLMSAS 229          
BLAST of CF833983 vs. ExPASy Swiss-Prot
Match: U49D7_ARATH (UPF0497 membrane protein At5g62820 OS=Arabidopsis thaliana GN=At5g62820 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.720e-31
Identity = 91/229 (39.74%), Postives = 119/229 (51.97%), Query Frame = 2
Query:  152 HSPLRXXXXXXXXXXXXXXXXXXXQKSPINHDDKPNSKAIVAVADKFTQSSPM---------------LEKPAEV----------KTSVMFNKAVREDGTPSVMKTEXXXXXXXXXXXXXXILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISAS 763
            HSPLR                   + SP   +   N K+IVA  +K TQ SP+                ++ A V           + V+ N  VREDG  +   T                + R++ +  +    LGFR+ EV+L +ISFS+MAADKTQGWSGDS+DRY+EYRYCL+VNVIAFVYS F+A D A Y+AK  ++I       F F MDQ+LAYLL+SAS
Sbjct:   21 HSPLRFHSPLSDAGDLPESRYVSPEGSPFKIE---NPKSIVA-GNKLTQFSPLPSPIPPPPPQFPPPRRQRNARVPMNSSSDKSPSSMVVHNSWVREDGGQTT--TRKAGAPINGEESTRTTVNRARGDDLVSLTALGFRITEVILCVISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACDAACYIAKESYMINCGFHDLFVFSMDQLLAYLLMSAS 243          
BLAST of CF833983 vs. ExPASy Swiss-Prot
Match: U49A7_ARATH (UPF0497 membrane protein At5g40300 OS=Arabidopsis thaliana GN=At5g40300 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.906e-22
Identity = 63/174 (36.21%), Postives = 93/174 (53.45%), Query Frame = 2
Query:  245 DDKPNSKAIVAVADKFTQSS-PMLEKPAEVKTSVMFNKAVREDGTPSVMKTEXXXXXXXXXXXXXXILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISAS 763
            +  P+S  + ++ D    S   ++  P+  KT   F      +G      +E                + SK+ + +  A LGFR+I  V  L+SFSVM +D+ +GW+ DSF  Y+E+R+CL+ NVI FVYSGF   DL Y L+      R++LR   +F +DQ+LAYLL SAS
Sbjct:   46 ESPPDSPTLSSIPDSHGSSPHTIIPTPSVAKTETPFRVT---NGEEEKKVSESRRQLRPSFSSSSSTPRESKWASLIRKALLGFRVIAFVSCLVSFSVMVSDRDKGWAHDSFYNYKEFRFCLAANVIGFVYSGFMICDLVYLLSTSIRRSRHNLRHFLEFGLDQMLAYLLASAS 216          
BLAST of CF833983 vs. ExPASy Swiss-Prot
Match: U497F_MAIZE (UPF0497 membrane protein 15 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.563e-16
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  440 ILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISAS 763
            IL R +  A +  A L  R     L L + +V+A+D  +GW+ DS+  Y ++RY  +VNV+ F+YS FQ   LA  + + KH+I +  R  FDF MDQ++AYLLIS+S
Sbjct:  142 ILSRKRRAAVMQRAALLARAAAAGLCLAALAVLASDTRRGWARDSYSNYAQFRYSEAVNVVGFLYSVFQFVALAELMRRNKHLIPHPKRDLFDFTMDQVVAYLLISSS 249          
BLAST of CF833983 vs. ExPASy Swiss-Prot
Match: U4975_SORBI (UPF0497 membrane protein Sb04g002820 OS=Sorghum bicolor GN=Sb04g002820 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.548e-16
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  440 ILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISAS 763
            IL R +  A +    L  R     L L + +V+AAD  +GW+ DS+  Y ++RY  +VNVI F+YS FQ   L   + + KH+I +  R  FDF MDQ+L YLLIS+S
Sbjct:  292 ILSRKRRAAAMQRTALLARGAAAGLCLAALAVLAADTRKGWARDSYSNYTQFRYSEAVNVIGFIYSVFQFVALVELMRRNKHLIPHPKRDLFDFTMDQVLTYLLISSS 399          
BLAST of CF833983 vs. ExPASy Swiss-Prot
Match: U497G_MAIZE (UPF0497 membrane protein 16 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.013e-15
Identity = 46/108 (42.59%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  440 ILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISAS 763
            IL R +  A +  A L  R       L + +V+AAD  +GW+ DS+  Y ++RY  +VNV+ F+YS FQ   LA  + +  H+I +  R  FDF MDQ+LAYLLIS+S
Sbjct:  146 ILSRKRRAAVMQRAALLARAAAAGXXLAALTVLAADTRRGWARDSYSNYAQFRYSEAVNVVGFLYSVFQFVALAELMRRNTHLIPHPKRGLFDFTMDQVLAYLLISSS 253          
BLAST of CF833983 vs. ExPASy Swiss-Prot
Match: U497R_ORYSJ (UPF0497 membrane protein Os02g0134500 OS=Oryza sativa subsp. japonica GN=Os02g0134500 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.577e-15
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  440 ILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISAS 763
            IL R +  A L    L  R+   +L L + +V+AAD  +G++ DS+  Y + RY  +VNVI FVYS  Q + LA  + + KH+        FDFFMDQ+LAYLLIS+S
Sbjct:  148 ILLRKRPTAVLQRTALVARVAAALLCLAALAVLAADSRKGFALDSYSNYSQLRYSEAVNVIGFVYSVLQFFVLADLMRRNKHLNPRRKGDYFDFFMDQVLAYLLISSS 255          
BLAST of CF833983 vs. ExPASy Swiss-Prot
Match: U497H_MAIZE (UPF0497 membrane protein 17 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.259e-14
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  485 LGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISAS 763
            L  RL   VLSL +FSV+A+ +T GW+GD + R+ +YRY ++VNVI F YS  Q+     +L   +   R         F+DQ+LAYLL+SAS
Sbjct:  225 LALRLATAVLSLAAFSVIASARTSGWAGDYYARHLQYRYAVAVNVIVFAYSVAQSLGKIRHLVSPRFTFRTMSSYYCSLFLDQVLAYLLMSAS 317          
BLAST of CF833983 vs. ExPASy Swiss-Prot
Match: U4974_SORBI (UPF0497 membrane protein Sb03g029220 OS=Sorghum bicolor GN=Sb03g029220 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.875e-12
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  494 RLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISAS 763
            RL   VLSL +FSV+A+ +T GW+GD +  + +YRY ++VNVI   YS  Q++     L   + + R         F+DQ LAYLL+SAS
Sbjct:  320 RLATAVLSLAAFSVIASARTSGWAGDYYAHHLQYRYAVAVNVIVCAYSIAQSFGEIRRLISPRFIFRSMSSYYCSLFLDQALAYLLMSAS 409          
The following BLAST results are available for this feature:
BLAST of CF833983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
U497A_ARATH1.897e-3871.30UPF0497 membrane protein At2g36330 OS=Arabidopsis ... [more]
U49D7_ARATH1.720e-3139.74UPF0497 membrane protein At5g62820 OS=Arabidopsis ... [more]
U49A7_ARATH1.906e-2236.21UPF0497 membrane protein At5g40300 OS=Arabidopsis ... [more]
U497F_MAIZE1.563e-1642.59UPF0497 membrane protein 15 OS=Zea mays PE=2 SV=1[more]
U4975_SORBI4.548e-1642.59UPF0497 membrane protein Sb04g002820 OS=Sorghum bi... [more]
U497G_MAIZE1.013e-1542.59UPF0497 membrane protein 16 OS=Zea mays PE=2 SV=2[more]
U497R_ORYSJ8.577e-1543.52UPF0497 membrane protein Os02g0134500 OS=Oryza sat... [more]
U497H_MAIZE3.259e-1444.09UPF0497 membrane protein 17 OS=Zea mays PE=2 SV=1[more]
U4974_SORBI8.875e-1242.22UPF0497 membrane protein Sb03g029220 OS=Sorghum bi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_04K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833983 ID=CF833983; Name=CF833983; organism=Citrus sinensis; type=EST; length=765bp
GAGAAACCCAAACTTTGGCGGATAAATTATGGAAACCAAATCACAACATC
AAAACATACAGCAAAAGACAAACACAAAGAGAGCCAACGGCAACAACATG
AAACGATCTTCGTCGTCGAACTCCGACTCTCCTCACTCACCGCACCGTTT
CCACTCGCCACTCCGATCCGACCCGGGCGACCCCGACCCCCCCGACGCCT
TCGCTTCTCCTGACGCCTCGCCACAGAAGTCACCGATAAATCATGACGAC
AAACCGAACTCGAAAGCCATCGTCGCCGTCGCCGACAAGTTCACGCAGAG
CTCTCCGATGCTGGAGAAGCCGGCGGAGGTAAAGACTTCTGTAATGTTTA
ACAAGGCAGTGAGAGAAGACGGTACGCCTTCTGTGATGAAGACCGAACCC
GGCCGAGTAGGAGGAGGGAGATCGGGGCCGGTGGCGTCGATACTGAAGAG
ATCGAAGTTTGAGGCGAGGCTGATGTTTGCGAATTTAGGGTTTAGGTTAA
TCGAAGTCGTTTTGAGTCTGATTTCTTTCTCTGTTATGGCCGCTGATAAG
ACGCAGGGCTGGAGCGGCGATTCCTTTGATCGTTACAGAGAATACAGGTA
CTGTTTATCTGTGAACGTTATTGCATTTGTATATTCGGGATTTCAAGCAT
ATGATCTAGCTTACTATCTGGCCAAGGGAAAACATGTGATCCGATACCAT
CTCAGGCAACCCTTTGATTTTTTTATGGACCAGATACTGGCATATCTTCT
TATATCGGCGTCATC
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