CF833984

Overview
NameCF833984
Unique NameCF833984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12237 contig Csv1_Contig12237:159..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK3_ARATH (Nucleoside diphosphate kinase III, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDPK3 PE=1 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 1.996e-100
Identity = 175/215 (81.40%), Postives = 199/215 (92.56%), Query Frame = -3
Query:  189 KNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRA-GSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 830
            KN+RF+SEGRA+ AAAAV+ SGK+P   S+F R+ GS  AS+SW++G +A+PAAAY +Q+QEV AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLV IK++VPSK+FAQKHYHDLKERPFFNGLC+FLSSGPVIAMVWEG+GVI YGRKLIGATDPQKSEPGTIRGDLAV VGRNIIHGSDGPETAKDEI LWFKP++LV+YTSN+EKW+Y
Sbjct:   21 KNARFFSEGRAIGAAAAVSASGKIPLYASNFARSSGSGVASKSWITGLLALPAAAYMIQDQEVLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGRNIIHGSDGPETAKDEISLWFKPQELVSYTSNSEKWLY 235          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK4_ARATH (Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2)

HSP 1 Score: 360.533 bits (924), Expect = 6.422e-99
Identity = 171/214 (79.91%), Postives = 194/214 (90.65%), Query Frame = -3
Query:  189 KNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 830
            KN+RF+SEGRA+ AA+ V  +GK+P   S+FG++GS   S SW++G +A+PAAA+ LQ+QE  AAEMERTFIAIKPDGVQRGLISEII+RFERKG+KLV IK++VPSK FAQKHYHDLKERPFFNGLC FLSSGPV+AMVWEGEGVI YGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEI LWFKPE+LV+YTSNAEKW+Y
Sbjct:   21 KNARFFSEGRAIGAASVVHATGKVPQYASNFGKSGSGFVSNSWITGLLALPAAAFMLQDQEALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWIY 234          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK4_SPIOL (Nucleoside diphosphate kinase 4, chloroplastic OS=Spinacia oleracea GN=NDK4 PE=1 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.934e-95
Identity = 171/213 (80.28%), Postives = 188/213 (88.26%), Query Frame = -3
Query:  189 NSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 827
            +SRF  EGR V+A AAV+   K PYL S     G + AS +W+S A+AIPAAAY LQ+QE  AAE ERTFIAIKPDGVQRGLISEI++RFERKGFKLVAIK+V+PSK+FAQKHYHDL ERPFFNGLC+FLSSGPV+AMVWEGEGVI YGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPE+LVNYT NAEKW+Y
Sbjct:   24 SSRFLPEGRTVAATAAVSLRVKAPYLASF----GGANASGTWMSTALAIPAAAYLLQDQEACAAEFERTFIAIKPDGVQRGLISEIVARFERKGFKLVAIKVVIPSKDFAQKHYHDLSERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNYTHNAEKWIY 232          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK3_SPIOL (Nucleoside diphosphate kinase 3 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.338e-71
Identity = 127/150 (84.67%), Postives = 139/150 (92.67%), Query Frame = -3
Query:  189 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 638
            AE ERTFIAIKPDGVQRGLISEI++RFERKGF LVAIK+V+PS+ FAQKHY DLK++PF+ GL  + SSGPV+AMVWEGEGVI YGRKLIGATDPQKSEPGTIRGDLAVV GRNIIHGSDGPETAKDEIKLWFKPE+LVNYT NAEKW+Y
Sbjct:    1 AEFERTFIAIKPDGVQRGLISEIVARFERKGFSLVAIKVVIPSRPFAQKHYADLKDKPFYVGLVAYWSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVNGRNIIHGSDGPETAKDEIKLWFKPEELVNYTHNAEKWIY 150          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.831e-53
Identity = 98/149 (65.77%), Postives = 119/149 (79.87%), Query Frame = -3
Query:  186 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 632
            +ERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K ++PSKE A+KHY   KERPFF GL  F++SGPV+AMVWEG+GVI   RKLIGAT P ++EPGTIRGDL + +GRN+IHGSDGPETA  EI LWF   +L N+  + +KW  E
Sbjct:    3 VERTFLAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLIPSKELAEKHYGVHKERPFFTGLVGFITSGPVVAMVWEGDGVILSARKLIGATKPLEAEPGTIRGDLGINIGRNVIHGSDGPETASFEIDLWFNSSELNNWNPSDQKWRVE 151          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.831e-53
Identity = 98/150 (65.33%), Postives = 122/150 (81.33%), Query Frame = -3
Query:  183 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 632
            +ERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+E A +HY   +ERPFF GL +F++SGPV+AMVWEG+GVI   RKLIGAT P ++EPGTIRGDLAV +GRN+IHGSDGP+TA+ EI LWF PE+L  +T + + W  ES
Sbjct:    3 VERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSPEELNAWTPSDQSWRVES 152          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SYNS3 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311) GN=ndk PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.327e-53
Identity = 96/148 (64.86%), Postives = 121/148 (81.76%), Query Frame = -3
Query:  186 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 629
            ER+FIAIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+E A++HY   KERPFF GL +F++SGPV+AMVWEG+GVIT  RK+IGAT P ++EPGTIRGDLA+ +GRN+IHGSD PETA+ EI LWF P +L ++T + + W  E
Sbjct:    4 ERSFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFGGLVDFITSGPVVAMVWEGDGVITSARKMIGATKPLEAEPGTIRGDLAINIGRNVIHGSDAPETAEFEIGLWFNPSELSDWTPSDQTWRVE 151          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_PROMS (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain AS9601) GN=ndk PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.957e-53
Identity = 99/149 (66.44%), Postives = 119/149 (79.87%), Query Frame = -3
Query:  183 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 629
            ERTFIAIKPDGVQRG +SEI+ RFE+KGFKLV +K ++PSKE AQ HY   +ERPFF  L +F+SSGPV+AMVWEGEGVI   RKLIGAT P ++EPGTIRGDLA+ +GRNIIHGSDG +TAK EI LWF  E+L  + ++  KW  E+
Sbjct:    4 ERTFIAIKPDGVQRGYVSEILGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEDTAKFEINLWFNEEELCEWETSDSKWRSEN 152          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.957e-53
Identity = 99/150 (66.00%), Postives = 120/150 (80.00%), Query Frame = -3
Query:  183 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 632
            MERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K V PS++ A +HY   +ERPFF GL +F++SGPVIAMVWEG+GVI   RKLIGAT P  +EPGTIRGDLAV +GRN+IHGSDGP+TA+ EI LWF  E+L  +T + + W  ES
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKPLDAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSAEELNAWTPSDQSWRIES 152          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.550e-52
Identity = 98/149 (65.77%), Postives = 121/149 (81.21%), Query Frame = -3
Query:  186 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 632
            +ERTF+AIKPDGVQRGLI+EI+ RFE KGFKLV +K + PSKE A+KHY   K+RPFF+GL +F++SGPVIAMVWEGEGVI   RKLIGAT P ++EPGTIRGDLAV +GRN+IHGSDG +TA  EI LWF+  +LV++  + + W  E
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAWRVE 151          
The following BLAST results are available for this feature:
BLAST of CF833984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK3_ARATH1.996e-10081.40Nucleoside diphosphate kinase III, chloroplastic/m... [more]
NDK4_ARATH6.422e-9979.91Nucleoside diphosphate kinase IV, chloroplastic/mi... [more]
NDK4_SPIOL1.934e-9580.28Nucleoside diphosphate kinase 4, chloroplastic OS=... [more]
NDK3_SPIOL4.338e-7184.67Nucleoside diphosphate kinase 3 OS=Spinacia olerac... [more]
NDK_PROMA1.831e-5365.77Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM31.831e-5365.33Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SYNS35.327e-5364.86Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_PROMS6.957e-5366.44Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMM6.957e-5366.00Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMT1.550e-5265.77Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04K21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833984 ID=CF833984; Name=CF833984; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTGGTGTAGCAAATTATTGCCGAAATTCCACTTTT
GGATCGTAACAAAGTTGTGTTTTACCTCATCTCAACAGAAACAATTTTAT
TCCACCAATTTATGCTTCTAATCCCACTATTCATGTGGGACCTAAGTTTC
TAATAAAAGTAAGAGAAAAATTGTAATCACTTGGATTCATAGACCCACTT
CTCTGCATTGCTTGTGTAATTAACCAAGTCTTCGGGTTTGAACCACAATT
TAATCTCATCCTTGGCGGTCTCGGGGCCATCACTTCCATGAATGATGTTT
CTTCCAACAACAACAGCTAGATCGCCTCTGATTGTTCCAGGTTCTGATTT
CTGAGGATCTGTGGCTCCAATGAGTTTGCGACCATACGTAATAACTCCCT
CTCCTTCCCATACCATGGCAATGACTGGACCAGAGCTAAGGAACTCGCAC
AGGCCATTAAAGAAGGGTCTTTCCTTCAGATCATGATAATGTTTTTGTGC
AAACTCTTTTGATGGAACTACTATCTTAATGGCCACAAGCTTAAAGCCTT
TGCGCTCAAAGCGAGAGATGATTTCTGAAATCAGTCCTCTTTGCACCCCA
TCTGGCTTGATGGCAATGAAAGTGCGTTCCATCTCTGCAGCATGTACTTC
CTGCTCCTGGAGCGTGTAAGCTGCAGCAGGAATTGCAATGGCTCCCGAGA
GCCATGATCGAGATGCAGTTGAGGAACCAGCCCTCCCAAAACTTGAAACA
AGATAAGGCAACTTCCCACTGAATGTAACTGCCGCTGCAGCAGATACAGC
TCGCCCTTCGGAGTAAAAGCGCGAATTCTTGG
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