CF833990

Overview
NameCF833990
Unique NameCF833990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10563 contig Csv1_Contig10563:709..1312. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFA4A_ARATH (Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.016e-50
Identity = 94/135 (69.63%), Postives = 106/135 (78.52%), Query Frame = -3
Query:   18 SSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLRDDIERLKKKKK 422
            SS+SLPPFL KTYEM              SNKSFIVWNPP+F+RDLLP++FKHNNFSSFIRQLNTYGFRK DPEQWEFAN+DFVRGQP  +KNIHRRKPVHSHS  NL  Q  PLT+SER  + + IERL K+K+
Sbjct:    9 SSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLPNLQAQLNPLTDSERVRMNNQIERLTKEKE 143          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.439e-47
Identity = 92/141 (65.25%), Postives = 107/141 (75.89%), Query Frame = -3
Query:   18 MDDGQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLRDDIERLKKKKK 440
            MD+  G S+SLPPFL KTYEM              +NKSFIV NP +F+RDLLP++FKH NFSSFIRQLNTYGFRKVDPE+WEF N+DFVRG+P  +KNIHRRKPVHSHS  NL  Q  PLTESER+ + D IERLK +K+
Sbjct:    1 MDENNGGSSSLPPFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLVNLQAQ-NPLTESERRSMEDQIERLKNEKE 140          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.541e-44
Identity = 88/140 (62.86%), Postives = 100/140 (71.43%), Query Frame = -3
Query:   15 GQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQN-LHGQGTPLTESERQGLRDDIERLKKKKKV 431
            G G     PPFL KTYEM                 SF+VWNP DF+RDLLPKYFKHNNFSSFIRQLNTYGFRK+DPE+WEFANEDF+RG    LKNIHRRKPVHSHS QN ++G   PL ESER+ L ++I RLK +K +
Sbjct:   11 GGGGGGGPPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHSHSLQNQING---PLAESERRELEEEINRLKYEKSI 147          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.393e-44
Identity = 86/136 (63.24%), Postives = 101/136 (74.26%), Query Frame = -3
Query:   30 DGQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGT-PLTESERQGLRDDIERLK 434
            +G G   SLPPFL+KTYEM              +  SF+V N P+F RDLLPKYFKHNNFSSF+RQLNTYGFRKVDPEQWEFANEDF++GQ  RLKNIHRRKP+ SHS+   H QG  PLT++ER+   ++IERLK
Sbjct:    2 EGGGGGGSLPPFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPIFSHSS---HSQGAGPLTDNERKDYEEEIERLK 134          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.721e-38
Identity = 77/151 (50.99%), Postives = 96/151 (63.58%), Query Frame = -3
Query:   15 SSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGT---------------PLTESERQGLRDDIERLKKKKKV 422
            S+N+ PPFL KTY+M              +N SF+VW+PP+FA+DLLPKYFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   LK+I RRKP H H+ Q     G                   E  + GL +++ERLK+ K V
Sbjct:   33 SANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNV 183          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.641e-38
Identity = 77/151 (50.99%), Postives = 96/151 (63.58%), Query Frame = -3
Query:   15 SSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQG---------------TPLTESERQGLRDDIERLKKKKKV 422
            S+N+ PPFL KTY+M              +N SF+VW+PP+FA+DLLPKYFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   LK+I RRKP H H+ Q     G                   E  + GL +++ERLK+ K V
Sbjct:   35 SANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNV 185          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.350e-37
Identity = 78/144 (54.17%), Postives = 100/144 (69.44%), Query Frame = -3
Query:   15 SSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHS-----NQNLHGQGTPLT---ESERQGLRDDIERLKKKKKV 422
            SSN+ PPFL+KTY+M              +N SFIVW PP+FARDLLPK FKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   L++I RRKP H        +Q+ +GQ + ++   E  + GL +++ERLK+ K V
Sbjct:   31 SSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNV 174          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.143e-36
Identity = 76/150 (50.67%), Postives = 100/150 (66.67%), Query Frame = -3
Query:   15 SSNSLPP-FLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESE-------------RQGLRDDIERLKKKKKV 422
            ++NSLPP FL+KTY+M              +N SFIVW+PP+F+RDLLPKYFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   LK I RRK V  H + + + Q   L++ +             + GL +++E+LK+ K V
Sbjct:   45 NANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNV 194          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.678e-36
Identity = 75/141 (53.19%), Postives = 93/141 (65.96%), Query Frame = -3
Query:   15 GSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSN-QNLHGQGTPL---TESERQGLRDDIERLKKKKKV 425
            G + + PPFL KTYEM               N SF+VWN P+FARDLLPKYFKH+NFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   LK I+RRKP H ++  Q       P+    E  + G+ ++IE LK+ K V
Sbjct:   30 GVATAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEEIEMLKRDKNV 170          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.803e-35
Identity = 76/136 (55.88%), Postives = 91/136 (66.91%), Query Frame = -3
Query:   21 GSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNK-SFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLRDDIERLKKKK 425
            G      PFL KTYEM              ++  SF+VWN P+FA  LLP YFKH+NFSSFIRQLNTYGFRK+DPE+WEFANE F++GQ   LKNIHRRKP+HSHS    H  G  L ++ER    D+IERL ++K
Sbjct:   14 GGGGGPAPFLLKTYEMVDDPSTDAVVSWSDASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRKPIHSHS----HPPGA-LPDNERAIFEDEIERLSREK 144          
The following BLAST results are available for this feature:
BLAST of CF833990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
HFA4A_ARATH9.016e-5069.63Heat stress transcription factor A-4a OS=Arabidops... [more]
HFA4C_ARATH1.439e-4765.25Heat stress transcription factor A-4c OS=Arabidops... [more]
HFA4D_ORYSJ2.541e-4462.86Heat stress transcription factor A-4d OS=Oryza sat... [more]
HFA4B_ORYSJ7.393e-4463.24Heat stress transcription factor A-4b OS=Oryza sat... [more]
HSF8_SOLLC2.721e-3850.99Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HSF8_SOLPE4.641e-3850.99Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HFA1D_ARATH1.350e-3754.17Heat stress transcription factor A-1d OS=Arabidops... [more]
HFA1A_ARATH1.143e-3650.67Heat stress transcription factor A-1a OS=Arabidops... [more]
HSFA1_ORYSJ9.678e-3653.19Heat stress transcription factor A-1 OS=Oryza sati... [more]
HSFA5_ORYSJ4.803e-3555.88Heat stress transcription factor A-5 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04L03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04L03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833990 ID=CF833990; Name=CF833990; organism=Citrus sinensis; type=EST; length=604bp
GAGAACAGCCCCTAAACTTTTTTTTTTTTTTTTAACCTCTCAATATCATC
CCTGAGACCCTGTCTTTCTGATTCAGTTAATGGAGTTCCTTGTCCATGTA
GATTCTGATTAGAATGGCTATGAACTGGCTTTCGTCTATGGATGTTCTTC
AAACGTTCAGGCTGACCTCTCACAAAATCTTCATTTGCAAATTCCCATTG
TTCAGGATCAACTTTTCTAAAACCATATGTGTTGAGCTGTCTGATGAAGC
TTGAGAAGTTATTGTGCTTAAAGTATTTTGGTAACAAATCCCTAGCAAAA
TCTGGTGGATTCCACACAATAAAGCTCTTATTACTTGAACTCCAGGACAC
AGTCAAATCTGTCGAAGAATCATCTACCATCTCATATGTTTTTGCAAGAA
AGGGAGGAAGTGAATTTGAACTACCTTGGCCGTCATCCATCACAAACTAA
AGGATCCAATCACGCAGTCCCCAAACTCAATACCCAAAACTAAACCATAA
ACCAGTGCAAAATCCTATTTCCAGGGAAAGTCAAACACTTAATTTTCTTC
AATACCGCAACAGAATCTAAGCTGGAAAGCTCAAACTTCTGATTATTAGT
AAGC
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