CF834037

Overview
NameCF834037
Unique NameCF834037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length281
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3590 contig Csv1_Contig3590:358..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834037 vs. ExPASy Swiss-Prot
Match: ST7R_ARATH (7-dehydrocholesterol reductase OS=Arabidopsis thaliana GN=DWF5 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.222e-21
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 FLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 148
            FL YFYVIFLT+LLFDRAKRDDDRCRSKYGKYWK+YC+KV YRIIPGIY
Sbjct:  384 FLAYFYVIFLTLLLFDRAKRDDDRCRSKYGKYWKLYCEKVKYRIIPGIY 432          
BLAST of CF834037 vs. ExPASy Swiss-Prot
Match: DHCR7_MIMIV (Probable 7-dehydrocholesterol reductase OS=Acanthamoeba polyphaga mimivirus GN=DHCR7 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 2
Query:    2 FLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 148
            F+PYFY +++TILL  R  RD+ RC  KYGKYWK+Y ++VPYR IPGIY
Sbjct:  399 FIPYFYCVYMTILLVTRCLRDEQRCSRKYGKYWKMYTKRVPYRFIPGIY 447          
BLAST of CF834037 vs. ExPASy Swiss-Prot
Match: DHCR7_XENLA (7-dehydrocholesterol reductase OS=Xenopus laevis GN=dhcr7 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 2
Query:    5 LPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 148
            LPYFY I++TILL  R  RD+ RC SKYGK WK+Y   VPYR++PG++
Sbjct:  426 LPYFYFIYMTILLVHRCIRDEHRCSSKYGKDWKLYTSAVPYRLLPGLF 473          
BLAST of CF834037 vs. ExPASy Swiss-Prot
Match: LBR_RAT (Lamin-B receptor OS=Rattus norvegicus GN=Lbr PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.940e-12
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 2
Query:    5 LPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 148
            LPYFYVI+ T LL  R  RD+ +CR KYG  W+ YCQ+VPYRI P IY
Sbjct:  573 LPYFYVIYFTALLIHREARDEHQCRRKYGLAWEKYCQRVPYRIFPYIY 620          
BLAST of CF834037 vs. ExPASy Swiss-Prot
Match: LBR_MOUSE (Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.145e-12
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 2
Query:    5 LPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 148
            LPYFY+I+ T LL  R  RD+ +CR KYG  W+ YCQ+VPYRI P IY
Sbjct:  579 LPYFYIIYFTALLIHREARDEHQCRRKYGLAWEKYCQRVPYRIFPYIY 626          
BLAST of CF834037 vs. ExPASy Swiss-Prot
Match: DHCR7_XENTR (7-dehydrocholesterol reductase OS=Xenopus tropicalis GN=dhcr7 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.720e-12
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 2
Query:    5 LPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 148
            LPYFY  ++TILL  R  RD+ RC SKYGK WK+Y   VPYR++PG++
Sbjct:  426 LPYFYFTYMTILLVHRCIRDEHRCSSKYGKDWKLYTDAVPYRLLPGLF 473          
BLAST of CF834037 vs. ExPASy Swiss-Prot
Match: LBR_PONAB (Lamin-B receptor OS=Pongo abelii GN=LBR PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 2
Query:    5 LPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 148
            LPYFY+I+ T+LL  R  RD+  C+ KYG  W+ YCQ+VPYRI P IY
Sbjct:  568 LPYFYIIYFTMLLVHREARDEYHCKKKYGVAWEKYCQRVPYRIFPYIY 615          
BLAST of CF834037 vs. ExPASy Swiss-Prot
Match: LBR_HUMAN (Lamin-B receptor OS=Homo sapiens GN=LBR PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 2
Query:    5 LPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 148
            LPYFY+I+ T+LL  R  RD+  C+ KYG  W+ YCQ+VPYRI P IY
Sbjct:  568 LPYFYIIYFTMLLVHREARDEYHCKKKYGVAWEKYCQRVPYRIFPYIY 615          
BLAST of CF834037 vs. ExPASy Swiss-Prot
Match: ERG24_MOUSE (Delta(14)-sterol reductase OS=Mus musculus GN=Tm7sf2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 2
Query:    5 LPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 148
            LPYFYV++ T LL  R  RD+ +C  KYG+ W+ YC++VPYRIIP +Y
Sbjct:  371 LPYFYVLYFTALLVHREARDEQQCLQKYGRAWQEYCKRVPYRIIPYVY 418          
BLAST of CF834037 vs. ExPASy Swiss-Prot
Match: DHCR7_RAT (7-dehydrocholesterol reductase OS=Rattus norvegicus GN=Dhcr7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.554e-11
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 2
Query:    5 LPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 148
            LPYFY+I++TILL  R  RD+ RC +KYG+ W+ Y   VPYR++PGI+
Sbjct:  424 LPYFYIIYMTILLTHRCLRDEHRCANKYGRDWERYVAAVPYRLLPGIF 471          
The following BLAST results are available for this feature:
BLAST of CF834037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ST7R_ARATH1.222e-2189.807-dehydrocholesterol reductase OS=Arabidopsis thal... [more]
DHCR7_MIMIV1.108e-1463.27Probable 7-dehydrocholesterol reductase OS=Acantha... [more]
DHCR7_XENLA1.768e-1260.427-dehydrocholesterol reductase OS=Xenopus laevis G... [more]
LBR_RAT3.940e-1262.50Lamin-B receptor OS=Rattus norvegicus GN=Lbr PE=1 ... [more]
LBR_MOUSE5.145e-1260.42Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2[more]
DHCR7_XENTR6.720e-1258.337-dehydrocholesterol reductase OS=Xenopus tropical... [more]
LBR_PONAB1.497e-1158.33Lamin-B receptor OS=Pongo abelii GN=LBR PE=2 SV=1[more]
LBR_HUMAN1.497e-1158.33Lamin-B receptor OS=Homo sapiens GN=LBR PE=1 SV=2[more]
ERG24_MOUSE1.497e-1156.25Delta(14)-sterol reductase OS=Mus musculus GN=Tm7s... [more]
DHCR7_RAT2.554e-1156.257-dehydrocholesterol reductase OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04M18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04M18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834037 ID=CF834037; Name=CF834037; organism=Citrus sinensis; type=EST; length=281bp
TTTTCTACCATACTTCTACGTTATATTTCTTACGATCCTTCTTTTCGACC
GAGCTAAAAGAGACGATGATAGATGTCGATCCAAATACGGGAAATACTGG
AAAATATACTGCCAGAAGGTTCCCTACCGGATCATTCCTGGAATCTACTG
AGACATTTATCAATGTTGAATCTCTGACCGTGGCTCATTTCAAATTTCTT
GGCCTCTTCATATCAGATGGTTATGTTCGTGAGTCCATGTACCATTTATC
TCCGCCTAACTGTTGTCTCTGACTAGACACT
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