CF834051

Overview
NameCF834051
Unique NameCF834051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13307 contig Csv1_Contig13307:1558..2325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834051 vs. ExPASy Swiss-Prot
Match: P2R3C_XENTR (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Xenopus tropicalis GN=ppp2r3c PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.168e-35
Identity = 76/161 (47.20%), Postives = 105/161 (65.22%), Query Frame = -1
Query:  286 KDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLPYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNRENLL 768
            KD NG LSK+EL  Y  GTLT +F++RVF E +           EMD+ ++LDFVLALEN+  P  L Y+F+ LD++ +G L    ++  FR + ++    G   +  +DV+DEI+DMVKP DPLRITL DL+   QG TV S+LID+ GFW ++NRE L+
Sbjct:  282 KDHNGMLSKEELSRYGTGTLTCVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGSLNVFSLNFFFRAIQEQMKIHGQEAVSFQDVKDEIFDMVKPKDPLRITLQDLIQSSQGDTVCSILIDLNGFWTYENREVLV 435          
BLAST of CF834051 vs. ExPASy Swiss-Prot
Match: P2R3C_RAT (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Rattus norvegicus GN=Ppp2r3c PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.568e-35
Identity = 72/161 (44.72%), Postives = 105/161 (65.22%), Query Frame = -1
Query:  286 KDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLPYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNRENLL 768
            KD NG LSK+EL  Y   T+T +F++RVF E +           EMD+ ++LDFVLALEN+  P  L Y+F+ LD++ +GYL    ++  FR + +     G   +  +DV+DEI+DMVKP DPL+I+L DL++  QG TV ++LID+ GFW ++NRE L+
Sbjct:  287 KDHNGMLSKEELSRYGTATMTNVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFRAIQELMKIHGQDPVSFQDVKDEIFDMVKPKDPLKISLQDLINSNQGDTVTTILIDLNGFWTYENREALV 440          
BLAST of CF834051 vs. ExPASy Swiss-Prot
Match: P2R3C_MOUSE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Mus musculus GN=Ppp2r3c PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 7.568e-35
Identity = 72/161 (44.72%), Postives = 105/161 (65.22%), Query Frame = -1
Query:  286 KDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLPYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNRENLL 768
            KD NG LSK+EL  Y   T+T +F++RVF E +           EMD+ ++LDFVLALEN+  P  L Y+F+ LD++ +GYL    ++  FR + +     G   +  +DV+DEI+DMVKP DPL+I+L DL++  QG TV ++LID+ GFW ++NRE L+
Sbjct:  287 KDHNGMLSKEELSRYGTATMTNVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFRAIQELMKIHGQDPVSFQDVKDEIFDMVKPKDPLKISLQDLINSNQGDTVTTILIDLNGFWTYENREALV 440          
BLAST of CF834051 vs. ExPASy Swiss-Prot
Match: P2R3C_HUMAN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Homo sapiens GN=PPP2R3C PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.568e-35
Identity = 72/161 (44.72%), Postives = 105/161 (65.22%), Query Frame = -1
Query:  286 KDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLPYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNRENLL 768
            KD NG LSK+EL  Y   T+T +F++RVF E +           EMD+ ++LDFVLALEN+  P  L Y+F+ LD++ +GYL    ++  FR + +     G   +  +DV+DEI+DMVKP DPL+I+L DL++  QG TV ++LID+ GFW ++NRE L+
Sbjct:  287 KDHNGMLSKEELSRYGTATMTNVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFRAIQELMKIHGQDPVSFQDVKDEIFDMVKPKDPLKISLQDLINSNQGDTVTTILIDLNGFWTYENREALV 440          
BLAST of CF834051 vs. ExPASy Swiss-Prot
Match: P2R3C_DANRE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Danio rerio GN=ppp2r3c PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.568e-35
Identity = 73/161 (45.34%), Postives = 106/161 (65.84%), Query Frame = -1
Query:  286 KDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLPYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNRENLL 768
            KD NG LSK+EL  Y  GTLT +F++RV+   +           EMD+ ++LDFVLALEN+  P  L Y+F+ LD++ +GYL    ++  FR + ++    G   +  +DV+DEI+DMVKP DP +ITL DL++  QG TV+S+LID+ GFW ++NRE L+
Sbjct:  290 KDHNGMLSKEELSRYGTGTLTSVFLDRVYQACLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDMENKGYLNVFALNYFFRAIQEQMKIHGQEPVSFQDVKDEIFDMVKPKDPYKITLQDLVNSGQGDTVSSILIDLNGFWTYENREVLV 443          
BLAST of CF834051 vs. ExPASy Swiss-Prot
Match: P2R3C_BOVIN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Bos taurus GN=PPP2R3C PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.568e-35
Identity = 72/161 (44.72%), Postives = 105/161 (65.22%), Query Frame = -1
Query:  286 KDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLPYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNRENLL 768
            KD NG LSK+EL  Y   T+T +F++RVF E +           EMD+ ++LDFVLALEN+  P  L Y+F+ LD++ +GYL    ++  FR + +     G   +  +DV+DEI+DMVKP DPL+I+L DL++  QG TV ++LID+ GFW ++NRE L+
Sbjct:  287 KDHNGMLSKEELSRYGTATMTNVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFRAIQELMKIHGQDPVSFQDVKDEIFDMVKPKDPLKISLQDLINSNQGDTVTTILIDLNGFWTYENREALV 440          
BLAST of CF834051 vs. ExPASy Swiss-Prot
Match: P2R3A_MOUSE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha OS=Mus musculus GN=Ppp2r3a PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 44/157 (28.03%), Postives = 75/157 (47.77%), Query Frame = -1
Query:  295 DANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLPYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNRE 765
            D + T+ + +L  + DG ++   I+R+F   V R +       ++ +  F+ F+L+ E+K TP    Y FR +DL   G L+  ++   + +  Q+    G   L   D+  ++ D+V P  P RITL DL  C   G       +V  + A + RE
Sbjct:  272 DRDLTIDRSDLARHGDGAISSRMIDRIFSGAVTRARLPR-KVGKLSYADFVWFLLSEEDKTTPTSTEYWFRCMDLDGDGALSMFELEFFYEEQAQRMAARGVEPLPFHDLARQVLDLVAPRCPGRITLRDLKQCGLAGEFFDAFFNVDKYLAREQRE 427          
The following BLAST results are available for this feature:
BLAST of CF834051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
P2R3C_XENTR1.168e-3547.20Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_RAT7.568e-3544.72Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_MOUSE7.568e-3544.72Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_HUMAN7.568e-3544.72Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_DANRE7.568e-3545.34Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_BOVIN7.568e-3544.72Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3A_MOUSE1.389e-1228.03Serine/threonine-protein phosphatase 2A regulatory... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_04N05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834051 ID=CF834051; Name=CF834051; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTTTTTTTTTTTTGCTGATTTTAGTTTAACATTAGATTTTGAAATA
TCCTTCGGAGGTCCATGCATTCAATGTTCAATCACTCATTCTTTGCCGTC
CAAGTTCCTGCTACTTTCTTCTACACATTGAGAACATACAGATTCGAGTA
CTAGATATTCATTTAGAGATACATAAACACAAAACAAAATACATCAGCTT
CAGACAGCAGTCTTTTGTTAGTACAAACACATCCTTTAAATCATACACAA
GCCAGTCATTCTTCTTCAGGGTCTTCATCTTCCTGGAGAAGATTTTCTCT
ATTGTCATGAGCCCAGAAGCCACGAACGTCTATAAGCATGCTAGCTACAG
TCCCACCCTGTTTACAAGAAAGCAGATCGGCCAAAGTAATCCTTAGTGGG
TCAGCTGGTTTGACCATATCCCAAATTTCATCCCTTACATCCTCAATGCA
TAGTTCATAGTTCCCACCCTCAATCCATTTCTGATGCACGTCCCTGAAAA
GAGAGTGAATATCAGCTGTAGTGAGATATCCCCGTTCCTGAAGATCAAGA
CTGCGAAATAAATATGGTAACCCTTCTGGAGTATCTTTATTTTCTAAGGC
CAGAACAAAGTCAAGGAAACTGTCGAAGTCCATCTCCCTAGCATTTCCTC
CTCCACTTTTGCCACGTCGGACATGCTCATCAAATACCCTCTCAATGAAA
ATTTCTGTCAGTGTCCCATCTGCATATTCTCGAAGCTCCTGCTTGCTCAA
CGTCCCATTTGCATCCTT
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