CF834062

Overview
NameCF834062
Unique NameCF834062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834062 vs. ExPASy Swiss-Prot
Match: CSN7_ARATH (COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana GN=CSN7 PE=1 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 7.961e-82
Identity = 152/224 (67.86%), Postives = 183/224 (81.70%), Query Frame = 3
Query:    3 EIEHKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNVLSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVHSK 674
            +IE KQA +I+Q VK+AST      AL  LI+EATSHPSLFAFSEIL++PN+ QL+GT  SVY+DLLRLFAHGTW DYK NA  LP L PDQ +KLKQL+VLTLAE NKVL YD L+ EL+V+NVRELEDFLINECMY GIV+GKL+QL+RCFEV FAAGRDLR GQL NM+ +L+NWL+TS+N+L  IQDKIKWA+ M E DKKH+ E +  +++VKKS+  K
Sbjct:    2 DIEQKQAEIIDQLVKRASTCKSE--ALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNWLNTSENLLISIQDKIKWADNMSEMDKKHRKEAEEGVEEVKKSLSMK 223          
BLAST of CF834062 vs. ExPASy Swiss-Prot
Match: CSN7_DICDI (COP9 signalosome complex subunit 7 OS=Dictyostelium discoideum GN=csn7 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.204e-37
Identity = 83/209 (39.71%), Postives = 131/209 (62.68%), Query Frame = 3
Query:   30 IEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNVLSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVK 656
            ++QFV  A +    G A+V +I +A +HPS+F F E+L +PN+ QL+ TE   Y DLL +FA+G++ DYK+    LPQL P    KLKQL+++ L+  + V+ Y  L +++E+ NVRELED +I + +Y  I+KGKL+Q  +  E+ F+ GRD++  QL++M+  L NW  TS  +L  I   I  ++ +  + +K K E +S  +  K
Sbjct:   14 LKQFVVLAKS--SKGRAIVSIIEKALNHPSVFVFGELLDMPNVQQLKETEFKNYYDLLLIFAYGSFIDYKNKKDSLPQLTPQMITKLKQLTIVFLSSTSNVIPYSVLQEQIEITNVRELEDLII-DSIYQNIIKGKLDQKNKHLEIDFSIGRDVQPEQLDSMINCLNNWSSTSQKLLDDISGLITHSDKVHLQYRKEKEEFESKFEIAK 219          
BLAST of CF834062 vs. ExPASy Swiss-Prot
Match: CSN7B_HUMAN (COP9 signalosome complex subunit 7b OS=Homo sapiens GN=COPS7B PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.377e-33
Identity = 77/213 (36.15%), Postives = 128/213 (60.09%), Query Frame = 3
Query:   27 LIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNVLSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 665
            L+EQF+  A   +G   AL  LI +    P ++ F E+L + N+ +L    ++ Y+ LL LFA+GT+ DY +N   LP+L   Q  KLK L++++LA   K + Y  LLK+LE+ N+RELED +I E +Y  I++GKL+Q  +  EV F  GRD+R   + N++++L  W D  + VL  I+ ++  A    E   + + +V++ + ++KK++
Sbjct:   11 LLEQFILLAKGTSGS--ALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTL 220          
BLAST of CF834062 vs. ExPASy Swiss-Prot
Match: CSN7B_BOVIN (COP9 signalosome complex subunit 7b OS=Bos taurus GN=COPS7B PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.377e-33
Identity = 77/213 (36.15%), Postives = 128/213 (60.09%), Query Frame = 3
Query:   27 LIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNVLSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 665
            L+EQF+  A   +G   AL  LI +    P ++ F E+L + N+ +L    ++ Y+ LL LFA+GT+ DY +N   LP+L   Q  KLK L++++LA   K + Y  LLK+LE+ N+RELED +I E +Y  I++GKL+Q  +  EV F  GRD+R   + N++++L  W D  + VL  I+ ++  A    E   + + +V++ + ++KK++
Sbjct:   11 LLEQFILLAKGTSGS--ALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHSRTQQQVEAEVTNIKKTL 220          
BLAST of CF834062 vs. ExPASy Swiss-Prot
Match: CSN7B_MOUSE (COP9 signalosome complex subunit 7b OS=Mus musculus GN=Cops7b PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.798e-33
Identity = 77/213 (36.15%), Postives = 128/213 (60.09%), Query Frame = 3
Query:   27 LIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNVLSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 665
            L+EQF+  A   +G   AL  LI +    P ++ F E+L + N+ +L    ++ Y+ LL LFA+GT+ DY +N   LP+L   Q  KLK L++++LA   K + Y  LLK+LE+ N+RELED +I E +Y  I++GKL+Q  +  EV F  GRD+R   + N++++L  W D  + VL  I+ ++  A    E   + + +V++ + ++KK++
Sbjct:   11 LLEQFILLAKGTSGS--ALTTLISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLNLFAYGTYPDYIANKESLPELSVAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHHRTQQQVEAEVSNIKKTL 220          
BLAST of CF834062 vs. ExPASy Swiss-Prot
Match: CSN7_DROME (COP9 signalosome complex subunit 7 OS=Drosophila melanogaster GN=CSN7 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.058e-29
Identity = 75/218 (34.40%), Postives = 129/218 (59.17%), Query Frame = 3
Query:   33 EQFVKQASTL--NGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNVLSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVHSKVN 680
            E F+++   L  +  G AL+ +I +A   P++F F E+L+ P++LQL+    S + + L LFA+GT+ +Y++      +L P    KL+ L++++LA   K + Y  LL ELE+ NVR LED +I E +Y  I+ GKL Q  R  EV +A GRD+  G    ++++L  W+++ D+V + I+ +IK+A     +   +K  V+  L ++KK + S+ +
Sbjct:   17 ETFLEKFCVLAKSSTGAALLDVIRQALEAPNVFVFGELLAEPSVLQLKDGPDSKHFETLNLFAYGTYKEYRAQPEKFIELTPAMQKKLQHLTIVSLAIKAKSIPYALLLSELEIDNVRHLEDIII-EAIYADIIHGKLFQNTRILEVDYAQGRDIPPGYTGQIVETLQAWVNSCDSVSNCIEMQIKYANAEKSKRLINKERVEQDLINLKKVLKSQTS 233          
BLAST of CF834062 vs. ExPASy Swiss-Prot
Match: CSN7A_MOUSE (COP9 signalosome complex subunit 7a OS=Mus musculus GN=Cops7a PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.021e-28
Identity = 73/211 (34.60%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   33 EQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNVLSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 665
            EQF+  A +  G   AL  LI +    P ++ F E+L +PN+ +L  ++ +    LL +FA+GT+ DY + A +LP L   Q  KL+ LSV+TLA   K + Y  LL+ L + NVR+LED +I E +Y  +++G L+Q  +  EV ++ GRD++   L  + Q+L  W    + VLS I++++  A    E+    K +++S + ++KK++
Sbjct:   13 EQFLLLAKSAKGA--ALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVFAYGTYADYLAEARNLPPLTDAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIAQTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTI 220          
BLAST of CF834062 vs. ExPASy Swiss-Prot
Match: CSN7A_PONAB (COP9 signalosome complex subunit 7a OS=Pongo abelii GN=COPS7A PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 72/211 (34.12%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   33 EQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNVLSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 665
            EQF+  A +  G   AL  LI +    P ++ F E+L +PN+ +L  ++ +    LL +FA+GT+ DY + A +LP L   Q  KL+ LSV+TLA   K + Y  LL+ L + NVR+LED +I E +Y  +++G L+Q  +  EV ++ GRD++   L  + ++L  W    + VLS I++++  A    E+    K +++S + ++KK++
Sbjct:   13 EQFLLLAKSAKGA--ALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTI 220          
BLAST of CF834062 vs. ExPASy Swiss-Prot
Match: CSN7A_HUMAN (COP9 signalosome complex subunit 7a OS=Homo sapiens GN=COPS7A PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 72/211 (34.12%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   33 EQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNVLSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 665
            EQF+  A +  G   AL  LI +    P ++ F E+L +PN+ +L  ++ +    LL +FA+GT+ DY + A +LP L   Q  KL+ LSV+TLA   K + Y  LL+ L + NVR+LED +I E +Y  +++G L+Q  +  EV ++ GRD++   L  + ++L  W    + VLS I++++  A    E+    K +++S + ++KK++
Sbjct:   13 EQFLLLAKSAKGA--ALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTI 220          
BLAST of CF834062 vs. ExPASy Swiss-Prot
Match: CSN7A_NEUCR (COP9 signalosome complex subunit 7a OS=Neurospora crassa GN=csn-7a PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20
Identity = 69/236 (29.24%), Postives = 121/236 (51.27%), Query Frame = 3
Query:   30 IEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGT-ESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAE---MNKVLSYDQLLKE-----------------LEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEV-QFAAGRDLRHGQLENMMQSLTNWLDTSDNVLSVIQDKI----KWAETMCEEDKKHKMEVKSHLQDVKK 659
            +E F+  + +   P  A   L+   TS P+ F F+E+L  P +  L+ + E S Y+ LL++F+HGT+ DY +NA+ LP L  DQ +KL+QLS+LTL      N  L YD + +E                 LE+++ RELE+ +I+  +Y G+++G+L+      ++   AA RD+    +  ++ SL  W       L  ++  +      A+    E+++   ++   L+D +K
Sbjct:   10 LEPFIVLSKSATSPRAA-ADLVTRVTSAPNTFIFTELLQTPQIQSLEYSHEFSSYLTLLQIFSHGTYADYIANASALPALNDDQKLKLRQLSLLTLVANDGSNVPLDYDAMQRENNQAQPPNQSYASLTRRLELSSARELEELVIS-AIYAGLIEGQLDPANEMVQINSVAALRDVPARGVNGLLSSLQGWAGRCQATLQELEATMANLRDEADRRATEEQEWNNKMSQLLEDEQK 243          
The following BLAST results are available for this feature:
BLAST of CF834062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CSN7_ARATH7.961e-8267.86COP9 signalosome complex subunit 7 OS=Arabidopsis ... [more]
CSN7_DICDI1.204e-3739.71COP9 signalosome complex subunit 7 OS=Dictyosteliu... [more]
CSN7B_HUMAN1.377e-3336.15COP9 signalosome complex subunit 7b OS=Homo sapien... [more]
CSN7B_BOVIN1.377e-3336.15COP9 signalosome complex subunit 7b OS=Bos taurus ... [more]
CSN7B_MOUSE1.798e-3336.15COP9 signalosome complex subunit 7b OS=Mus musculu... [more]
CSN7_DROME2.058e-2934.40COP9 signalosome complex subunit 7 OS=Drosophila m... [more]
CSN7A_MOUSE1.021e-2834.60COP9 signalosome complex subunit 7a OS=Mus musculu... [more]
CSN7A_PONAB2.971e-2834.12COP9 signalosome complex subunit 7a OS=Pongo abeli... [more]
CSN7A_HUMAN2.971e-2834.12COP9 signalosome complex subunit 7a OS=Homo sapien... [more]
CSN7A_NEUCR6.635e-2029.24COP9 signalosome complex subunit 7a OS=Neurospora ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_04N12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834062 ID=CF834062; Name=CF834062; organism=Citrus sinensis; type=EST; length=755bp
TGGAGATAGAACATAAACAAGCGCCCCTGATAGAGCAGTTTGTAAAGCAA
GCTTCGACTCTCAATGGGCCCGGCCCCGCCTTAGTCAAACTCATCGTCGA
AGCCACCTCTCACCCTTCTCTCTTCGCGTTCTCTGAGATTTTATCTGTCC
CCAACCTCCTTCAGCTTCAGGGAACTGAAAGTTCTGTGTACATTGACCTG
CTTCGTCTTTTTGCTCATGGCACGTGGACCGATTACAAAAGTAATGCTGC
TCATCTTCCACAGTTGGTACCCGATCAAGCAGTCAAGCTTAAACAACTCA
GTGTGCTTACTCTTGCTGAGATGAACAAGGTTCTCTCCTATGATCAACTT
CTGAAGGAACTTGAGGTTGCTAATGTGCGTGAACTTGAAGACTTCCTTAT
CAATGAATGCATGTATGTGGGGATAGTCAAAGGGAAGTTAAATCAGTTGA
GAAGATGCTTTGAGGTGCAATTTGCTGCAGGGAGGGATCTGAGACACGGC
CAACTTGAGAACATGATGCAGAGCTTAACTAATTGGTTGGACACTTCAGA
CAATGTTCTTTCCGTGATTCAAGACAAGATTAAGTGGGCTGAAACAATGT
GCGAAGAGGACAAAAAACACAAGATGGAAGTCAAAAGTCACTTGCAAGAT
GTGAAGAAATCTGTCCATTCAAAGGTCAATTGATTCAGTCCTTTCCTCTG
AAGTTTGTTTGTACGTAGGCTTATATGGTTTTGAGTTAGTGATAAGAATT
TAGGA
back to top