CF834069

Overview
NameCF834069
Unique NameCF834069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHSY_VITVI (Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 9.953e-71
Identity = 123/191 (64.40%), Postives = 155/191 (81.15%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G AT+LAIGTA P NC+YQADYPDYYFR TNS+H+T L++KFKR+CEKS + KRY H+T+ IL++NPN+CAY   SLD+RQ ++V EVPKLG+EAA KAIKEWGQ KS+ITHL+FC+  G+ MP ADY LTK+L L PSVKR+M+Y QGC+   T +R+ KD AENN  +RVL +CS+++  TFRGPSD H
Sbjct:   15 GPATVLAIGTATPANCVYQADYPDYYFRITNSEHMTELKEKFKRMCEKSMINKRYMHLTEEILKENPNVCAYMAPSLDARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKPSVKRLMMYQQGCFAGGTVLRLAKDLAENNAGSRVLVVCSEITAVTFRGPSDTH 205          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.300e-70
Identity = 123/198 (62.12%), Postives = 157/198 (79.29%), Query Frame = 1
Query:   31 KNQLQGGGLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            +N+ +  G A ILAIGTA P NC+YQADYPDYYFR TNS+H+T L+ KFKR+CEKS ++KRY H+T+  L++NPN+CAY+  SLD+RQ ++V EVP+LG+EAA KAIKEWGQ KS+ITHLIFC+  G+ MP ADY LTK+L L PSVKR M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGPSD+H
Sbjct:   13 RNRQRAQGPANILAIGTATPSNCVYQADYPDYYFRITNSEHMTDLKLKFKRMCEKSMIRKRYMHITEEYLKENPNVCAYEAPSLDARQDLVVVEVPRLGKEAASKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNAGARVLVVCSEITAVTFRGPSDSH 210          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 9.316e-69
Identity = 120/191 (62.83%), Postives = 152/191 (79.58%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G A ILAIGTA P NC+YQADYPDYYFR TNS+H++ L+ KFKR+CEKS ++KRY H+T+  L++NPN+CAY+  SLD+RQ ++V EVP+LG+EAA KAIKEWG  KS+ITHLIFC+  G+ MP ADY LTK+L L PSVKR M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGPSD+H
Sbjct:   19 GPANILAIGTATPSNCVYQADYPDYYFRITNSEHMSDLKLKFKRMCEKSMIRKRYMHITEEYLKENPNVCAYEAPSLDARQDLVVVEVPRLGKEAAAKAIKEWGHPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNTGARVLVVCSEITAVTFRGPSDSH 209          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHSY_CATRO (Chalcone synthase OS=Catharanthus roseus GN=CHS PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.217e-68
Identity = 122/198 (61.62%), Postives = 157/198 (79.29%), Query Frame = 1
Query:   31 KNQLQGGGLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            +N  +  G AT+LAIGT+ P NC+ Q+ YPDYYFR TNS+H T L++KFKR+CEKS +KKRY H+T+ IL++NPNICAY   SLD+RQ I+V EVPKLG+EAA+KAIKEWGQSKS+ITHL+FC+  G+ MP ADY LTK+L L  SVKR+M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGPS++H
Sbjct:    8 RNAQRAQGPATVLAIGTSTPSNCVDQSTYPDYYFRITNSEHKTELKEKFKRMCEKSMIKKRYMHLTEEILQENPNICAYMAPSLDARQNIVVVEVPKLGKEAAQKAIKEWGQSKSKITHLVFCTTSGVDMPGADYQLTKLLGLRSSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSESH 205          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHSE_IPONI (Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.710e-68
Identity = 122/191 (63.87%), Postives = 153/191 (80.10%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G ATI+AIGT+ P NC+ Q+ YPDYYFR TNS+H+  L++KFKR+CEKS +KKRY ++T+ IL++NPNICAY   SLD+RQ I+V EVPKLG+EAA+KAIKEWGQ KS+ITHL+FC+  G+ MP ADY LTK+L L PSVKR M+Y QGC+   T IR+ KD AENN   RVL +CS+++  TFRGPSDAH
Sbjct:   15 GPATIMAIGTSTPQNCVDQSTYPDYYFRITNSEHLVELKEKFKRMCEKSMIKKRYMYLTEEILKENPNICAYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLQPSVKRFMMYQQGCFAGGTVIRLAKDLAENNKGARVLVVCSEITAVTFRGPSDAH 205          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHS1_HORVU (Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.710e-68
Identity = 119/198 (60.10%), Postives = 155/198 (78.28%), Query Frame = 1
Query:   31 KNQLQGGGLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            +N  +  G AT+LAIGTA P NC+YQADYPDYYF+ T SDH+  L++KFKR+C+KS ++KRY H+T+ IL +NPN+CAY   SLD+RQ I+V EVPKLG+ AA+KAIKEWGQ +S+ITHL+FC+  G+ MP ADY LTKML L PSVKR+M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGP ++H
Sbjct:   11 RNAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYMHLTEEILEENPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPRSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESH 208          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHS2_CAMSI (Chalcone synthase 2 OS=Camellia sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 3.540e-68
Identity = 119/191 (62.30%), Postives = 154/191 (80.63%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G AT++AIGTA PPNC+ Q+ YPDYYFR TNS+H T L++KF+R+C+KS +KKRY ++T+ IL++NPN+CAY   SLD+RQ ++V EVPKLG+EAA KAIKEWGQ KS+ITHL+FC+  G+ MP ADY LTK+L L PSVKR+M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGPSDAH
Sbjct:   15 GPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMIKKRYMYLTEEILKENPNVCAYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDAH 205          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 4.623e-68
Identity = 120/191 (62.83%), Postives = 151/191 (79.06%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G AT+LAIGTA P NC+ QADYPDYYFR T SDH+T L++KFKR+C+KS +KKRY ++ + IL +NPN+CAY   SLD+RQ I+V EVPKLG+EAA KAIKEWGQ KS+ITHL+FC+  G+ MP ADY LTK+L L PSVKR+M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGP+D H
Sbjct:   15 GPATVLAIGTATPSNCITQADYPDYYFRITKSDHMTELKEKFKRMCDKSMIKKRYMYLNEEILNENPNMCAYMAPSLDARQTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTH 205          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHSE_IPOPU (Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.038e-68
Identity = 122/191 (63.87%), Postives = 152/191 (79.58%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G ATI+AIGT+ P NC+ Q+ YPDYYFR TNS+H+  L++KFKR+CEKS +KKRY ++T+ IL +NPNICAY   SLD+RQ I+V EVPKLG+EAA+KAIKEWGQ KS+ITHL+FC+  G+ MP ADY LTK+L L PSVKR M+Y QGC+   T IR+ KD AENN   RVL +CS+++  TFRGPSDAH
Sbjct:   15 GPATIMAIGTSTPQNCVDQSTYPDYYFRITNSEHLVELKEKFKRMCEKSMIKKRYMYLTEEILTENPNICAYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLQPSVKRFMMYQQGCFAGGTVIRLAKDLAENNKGARVLVVCSEITAVTFRGPSDAH 205          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.038e-68
Identity = 119/191 (62.30%), Postives = 153/191 (80.10%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G AT+LAIGTA P NC++QADYPDYYFR T S+H+T L++KFKR+C+KS ++KRY H+T+  L +NPN+CAY   SLD+RQ I+V EVPKLG+ AA+KAIKEWGQ KS+ITHL+FC+  G+ MP ADY LTKML L PSVKR+M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGPS++H
Sbjct:   19 GPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVKRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESH 209          
The following BLAST results are available for this feature:
BLAST of CF834069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHSY_VITVI9.953e-7164.40Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV... [more]
CHSY_PETCR1.300e-7062.12Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHS2_DAUCA9.316e-6962.83Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHSY_CATRO1.217e-6861.62Chalcone synthase OS=Catharanthus roseus GN=CHS PE... [more]
CHSE_IPONI2.710e-6863.87Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV... [more]
CHS1_HORVU2.710e-6860.10Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=... [more]
CHS2_CAMSI3.540e-6862.30Chalcone synthase 2 OS=Camellia sinensis GN=CHS2 P... [more]
CHSY_BETVE4.623e-6862.83Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHSE_IPOPU6.038e-6863.87Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE... [more]
CHS4_SORBI6.038e-6862.30Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_04N17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834069 ID=CF834069; Name=CF834069; organism=Citrus sinensis; type=EST; length=625bp
TAATATATAATGGAGAAAGATAAAGATGGGAAGAACCAACTGCAAGGAGG
AGGGTTAGCCACGATCCTAGCCATCGGAACTGCAAATCCACCTAACTGCT
TATACCAAGCTGACTACCCTGATTATTACTTCCGTGACACCAACAGTGAC
CACGTGACTCTCCTCGAACAAAAATTCAAACGCATCTGCGAGAAATCAAA
TGTAAAGAAACGCTACTTCCATGTTACCCAATATATTCTCAGAAAGAACC
CGAATATATGTGCCTACGACGGCTCCTCCCTCGATAGCCGTCAATATATA
TTGGTTAGGGAAGTACCGAAACTTGGCGAGGAAGCGGCAAAAAAAGCAAT
CAAAGAATGGGGCCAATCAAAATCCCAGATCACGCATCTCATTTTCTGCT
CACTTGTGGGCATATACATGCCCAGGGCTGACTATCTGCTGACCAAAATG
TTGCGCCTCAACCCATCTGTCAAACGAGTCATGCTATACTTTCAAGGCTG
TTACATTGTCGCCACAGCCATCCGAATGGGCAAGGACTTTGCTGAAAACA
ACCCTGATACCCGCGTTCTATACATATGCTCTGACTTATCCCTTGGTACT
TTCCGTGGACCTTCTGATGCCCACT
back to top