CF834079

Overview
NameCF834079
Unique NameCF834079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7903 contig Csv1_Contig7903:13..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: EIF3I_ARATH (Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2)

HSP 1 Score: 378.252 bits (970), Expect = 2.810e-104
Identity = 178/233 (76.39%), Postives = 205/233 (87.98%), Query Frame = 1
Query:  109 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQG--RIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITTYVT 801
            MRPILMKGHERPLT+L+YN++GDLLFSCAKDHTPT+WFADNGERLGTYRGHNGAVWCCDVSRDS  LITGSADQTAKLW+V++G +LFTF F++P RSVDFAVGD+LAVITTD F++  +AIHVKRIA DP +Q  ESVL+L  P G  RI+RAVWGPLN+TI+S GED ++RIWD ETGKLL++SD+E GHKK ITSL KAAD SHFLTGSLDK+AKLWD RTL L+ TY T
Sbjct:    1 MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRTAAIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTT 233          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: EIF3I_CULQU (Eukaryotic translation initiation factor 3 subunit I OS=Culex quinquefasciatus GN=CPIJ018275 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.309e-48
Identity = 97/235 (41.28%), Postives = 145/235 (61.70%), Query Frame = 1
Query:  109 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLIL----KGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITTYVT 801
            M+P++++GHER +T +KYN++GDL+FS AKDH P+VWF+ NGERLGTY GH GAVWC DV   +  LITG+ D + KLW+VETG+ L T   +S AR+ +F+     A  +TD  M  NS + +  +    +  S +S ++     +  Q +I   +WG L+ T+I+  E+  +RIWD  T K L   +  TG    I  +  +ADG+  ++ S D +AKL+D+ +L  + TY T
Sbjct:    1 MKPLMLQGHERAITQIKYNREGDLIFSTAKDHKPSVWFSLNGERLGTYNGHQGAVWCVDVDWTTTRLITGAGDMSTKLWDVETGSVLGTIPCNSAARTANFSFSGNQASYSTDKAMGHNSELFIIDVRNVDSSISSQSPVLKLTMNQSIQTKITSMLWGALDETVITGHENGSIRIWDLRTAKELNSVNDHTG---VINDMQLSADGTMLVSASKDTTAKLFDSESLMCLKTYKT 232          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: EIF3I_AEDAE (Eukaryotic translation initiation factor 3 subunit I OS=Aedes aegypti GN=AAEL013144 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.187e-47
Identity = 94/233 (40.34%), Postives = 142/233 (60.94%), Query Frame = 1
Query:  109 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGES--VLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITTYVT 801
            M+P++++GHER +T +KYN++GDL+FS AKDH P+VWF+ NGERLGT+ GH GAVWC DV   +  LITGS D + KLW+VETG+ L T   +S AR+V+F+     A  +TD  M  N  + +  +    +  S +S  + +    Q +I   +WG L+ T+I+  E+  +RIWD    K   E +    H   I  +  ++DG+  ++ S D +AKL+D+ +L  + TY T
Sbjct:    1 MKPLMLQGHERAITQIKYNREGDLIFSTAKDHKPSVWFSLNGERLGTFNGHQGAVWCVDVDWTTTRLITGSGDMSTKLWDVETGSVLGTIPCNSAARTVNFSYSGNQASYSTDKAMGHNCELFIIDVRNVDSSISNQSPVLKLTMNQQSKITSMLWGALDETVITGHENGSIRIWDLRAAK---ELNSVNDHTLNINDMQLSSDGTMLVSASKDATAKLFDSESLMCLKTYKT 230          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: EIF3I_DROSI (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila simulans GN=Trip1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.559e-46
Identity = 93/232 (40.09%), Postives = 139/232 (59.91%), Query Frame = 1
Query:  109 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA-GDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITTYVT 801
            MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  +  + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+  +  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  + TY T
Sbjct:    1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ--KVVDSGTDHSAGINDMQLSKDGTMFVTASRDTTAKLFDSESLMCLKTYKT 230          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: EIF3I_DROSE (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila sechellia GN=Trip1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.559e-46
Identity = 93/232 (40.09%), Postives = 139/232 (59.91%), Query Frame = 1
Query:  109 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA-GDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITTYVT 801
            MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  +  + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+  +  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  + TY T
Sbjct:    1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ--KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKT 230          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: EIF3I_DROME (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila melanogaster GN=Trip1 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.559e-46
Identity = 93/232 (40.09%), Postives = 139/232 (59.91%), Query Frame = 1
Query:  109 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA-GDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITTYVT 801
            MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  +  + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+  +  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  + TY T
Sbjct:    1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ--KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKT 230          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: EIF3I_SCHPO (Eukaryotic translation initiation factor 3 subunit I OS=Schizosaccharomyces pombe GN=tif34 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.327e-45
Identity = 93/232 (40.09%), Postives = 140/232 (60.34%), Query Frame = 1
Query:  109 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVL-ILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITTYVT 801
            MRPI+++GHERPLT +KYN DGDLLFSCAKD    VWF+ NGERLGTY GH GA+W CD+++ S  +++G+AD T +LW+V+TG QL+ + F +  + V+F   D   +  T+  M     + V R+    +D + E+ L ++   + +   A W  L++ + +  ED  V  +D  TG+ + ES +      TIT L    D ++F+T   D +AK  D  + E+I TY+T
Sbjct:    1 MRPIILQGHERPLTQIKYNHDGDLLFSCAKDKVINVWFSHNGERLGTYEGHTGAIWTCDINKSSTLMVSGAADNTMRLWDVKTGKQLYKWEFPTAVKRVEFNEDDTRILAVTEERMGYAGTVTVFRVPISESDAAAETPLYVITTRESKATVAGWSYLSKFLFTGHEDGSVSRYDAITGEFV-ESKQVHNSGSTITDLQFYPDRTYFITSCKDTTAKAIDVDSFEVIKTYLT 231          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: EIF3I_DROER (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila erecta GN=Trip1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.327e-45
Identity = 92/232 (39.66%), Postives = 138/232 (59.48%), Query Frame = 1
Query:  109 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA-GDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITTYVT 801
            MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D T K+W+VE G  + +    S  R+ +F+     A  +TD  M  +  + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+  +  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  + TY T
Sbjct:    1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTTKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ--KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKT 230          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: EIF3I_DROPS (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila pseudoobscura pseudoobscura GN=Trip1 PE=3 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.733e-45
Identity = 96/234 (41.03%), Postives = 139/234 (59.40%), Query Frame = 1
Query:  109 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS---AIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITTYVT 801
            MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D T KLW+VE G  + +    S  R+ +F+     A  +TD  M  N     I V+      ADQ+    L +   + +I    WGPL+ TII+  ++  + IWD   G+ + +S  +  H   I  +  + DG+ F+T S D +AKL+D+ +L  + TY T
Sbjct:    1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTTKLWDVEYGTIIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQNCELFIIDVRNADSTLADQT--PTLRIPMTESKITSMQWGPLDETIITGHDNGNIAIWDVRKGQKVVDSGSD--HAAGINDMQLSKDGTMFVTASRDTTAKLFDSESLMCLKTYKT 230          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: EIF3I_DROPE (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila persimilis GN=Trip1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.733e-45
Identity = 96/234 (41.03%), Postives = 139/234 (59.40%), Query Frame = 1
Query:  109 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS---AIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITTYVT 801
            MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D T KLW+VE G  + +    S  R+ +F+     A  +TD  M  N     I V+      ADQ+    L +   + +I    WGPL+ TII+  ++  + IWD   G+ + +S  +  H   I  +  + DG+ F+T S D +AKL+D+ +L  + TY T
Sbjct:    1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTTKLWDVEYGTIIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQNCELFIIDVRNADSTLADQT--PTLRIPMTESKITSMQWGPLDETIITGHDNGNIAIWDVRKGQKVVDSGSD--HAAGINDMQLSKDGTMFVTASRDTTAKLFDSESLMCLKTYKT 230          
The following BLAST results are available for this feature:
BLAST of CF834079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
EIF3I_ARATH2.810e-10476.39Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_CULQU8.309e-4841.28Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_AEDAE9.187e-4740.34Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROSI4.559e-4640.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROSE4.559e-4640.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROME4.559e-4640.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_SCHPO1.327e-4540.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROER1.327e-4539.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROPS1.733e-4541.03Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROPE1.733e-4541.03Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04N24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834079 ID=CF834079; Name=CF834079; organism=Citrus sinensis; type=EST; length=802bp
CTCCCACTAGCTCTATCTTTGCGGTCTCAAGGCTTTCCAACGCTCCACCG
GAAACTCCATTCGTCGCGGAATTCAGCAAAACAGAGAAAGAAGAAGAAAA
AAGCAAGCATGAGACCAATTTTGATGAAAGGCCATGAGAGGCCTTTAACA
TATCTTAAATACAACAAAGACGGAGATCTGCTCTTTTCATGTGCCAAGGA
TCACACACCCACCGTTTGGTTCGCTGACAATGGCGAGCGTCTTGGCACCT
ACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGATGTTTCAAGAGATTCG
ATGACGCTAATAACCGGGAGTGCTGACCAGACGGCGAAGCTATGGAATGT
TGAAACAGGGGCTCAGTTGTTCACATTCAATTTTGATTCTCCTGCTAGGT
CTGTCGACTTTGCTGTTGGTGATAAGCTTGCTGTGATTACTACTGATCCT
TTCATGGAATTAAACTCAGCCATTCATGTCAAACGCATTGCAGGAGATCC
TGCTGATCAGAGTGGTGAATCTGTGCTTATTCTAAAAGGCCCTCAGGGAA
GAATAGACAGAGCAGTTTGGGGACCTCTAAACAGGACTATCATTAGTGCT
GGAGAAGATGCTATAGTTCGTATTTGGGATACTGAGACAGGGAAACTGCT
TAGAGAGTCGGACAAGGAAACTGGTCATAAAAAGACTATAACATCGCTTG
CAAAAGCTGCTGATGGATCACATTTCCTCACTGGTTCCCTTGATAAATCT
GCTAAGCTGTGGGATGCCAGAACACTGGAGCTTATCACGACCTATGTGAC
GG
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