CF834099

Overview
NameCF834099
Unique NameCF834099
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1060 contig Csv1_Contig1060:1..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834099 vs. ExPASy Swiss-Prot
Match: ZN622_MOUSE (Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.097e-16
Identity = 56/184 (30.43%), Postives = 82/184 (44.57%), Query Frame = 1
Query:  232 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHXXXXXXXXXXXXXXXXXXSSSYMDEDGKQLISSSDMANTVELGGGS-ELIITKRTDKGTSTKTFGSREYLRYYRQK---PRP-SPANNVAITAALASRYKSMG 768
            C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++   F S EAV+ HM  K HCK+                      Y +      + +      +E    + ELI+        S    G R  +RYY+Q+   PR  + A N      +  +Y+++G
Sbjct:  253 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDYKEGQDPAELEALSTDKILECDDETMELIL-------PSGARVGHRSLMRYYKQRFGLPRAVTVARNQKAVGRVLQQYRALG 429          
BLAST of CF834099 vs. ExPASy Swiss-Prot
Match: ZN622_HUMAN (Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 63/192 (32.81%), Postives = 88/192 (45.83%), Query Frame = 1
Query:  232 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHXXXXXXXXXXXXXXXXXXSSSYMD-EDGKQLISSSDMANTVEL---GGGSELIITKRTDKGTSTKTFGSREYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREL 795
            C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++   F S EAV+ HM  K HCK+                    SSY D ++G+    + ++ +   L       ELI+        S    G R  +RYY+Q+   S A       A+A   K++G    Q R L
Sbjct:  254 CLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQAHMNDKSHCKL---FTDGDAALEFADFYDFRSSYPDHKEGEDPNKAEELPSEKNLEYDDETMELIL-------PSGARVGHRSLMRYYKQRFGLSRA------VAVAKNRKAVGRVLQQYRAL 429          
BLAST of CF834099 vs. ExPASy Swiss-Prot
Match: ZN622_RAT (Zinc finger protein 622 OS=Rattus norvegicus GN=Znf622 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.007e-15
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  232 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKI 471
            C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++   F S EAV+ HM  K HCK+
Sbjct:  247 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQAHMNDKSHCKL 326          
BLAST of CF834099 vs. ExPASy Swiss-Prot
Match: ZN622_CHICK (Zinc finger protein 622 OS=Gallus gallus GN=ZNF622 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.786e-14
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  232 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKI 471
            C  C      +   + HM K H FFIPD+EYL D +GL+ YLG K+    +C++CN++   F S EAV+ HM  K HCK+
Sbjct:  246 CLFCSHHSRTLMKNVAHMTKVHSFFIPDIEYLVDLRGLIKYLGEKIGVGKICIWCNEKGKSFYSTEAVQAHMNDKSHCKL 325          
BLAST of CF834099 vs. ExPASy Swiss-Prot
Match: YJVF_SCHPO (Zinc finger protein C550.15c OS=Schizosaccharomyces pombe GN=SPCC550.15c PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.728e-11
Identity = 34/83 (40.96%), Postives = 40/83 (48.19%), Query Frame = 1
Query:  223 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKI 471
            P  C  C     + + C  HM   H  +IP+ EYL D   L  YL  K+   F CL CN     F SLEAVR HM+ K H  I
Sbjct:  207 PRDCLFCAASFSSFDTCKKHMKASHSLYIPEREYLVDEPSLFDYLAEKISIGFTCLTCN---REFKSLEAVRAHMQQKGHTSI 286          
The following BLAST results are available for this feature:
BLAST of CF834099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ZN622_MOUSE3.097e-1630.43Zinc finger protein 622 OS=Mus musculus GN=Znf622 ... [more]
ZN622_HUMAN6.899e-1632.81Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 ... [more]
ZN622_RAT2.007e-1547.50Zinc finger protein 622 OS=Rattus norvegicus GN=Zn... [more]
ZN622_CHICK3.786e-1443.75Zinc finger protein 622 OS=Gallus gallus GN=ZNF622... [more]
YJVF_SCHPO8.728e-1140.96Zinc finger protein C550.15c OS=Schizosaccharomyce... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_04O19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834099 ID=CF834099; Name=CF834099; organism=Citrus sinensis; type=EST; length=841bp
ATAATTAAGCCAATTCCGCTTCGTGATGTAAATAACCCTCCTCGGAAAAG
AGAAGCAAACAATGAAGAAAGTGAAGATAGTGATGATGAGTGGGAAGAGG
TTGGTCCAGATGAAGTATTGGTTAGTGAGGCCACAAATTCTCTGACCAAT
TTGAATGTTGGGTCTCCCGCTGATGATGACTTGGAGGAGGATGACGATGA
TGGTGCCTTTGAGGAGTTCGATCCAGCATGTTGCTTCATGTGTGATCTTC
CGCACGATGCAATTGAGAACTGCATGGTTCACATGCACAAGTGTCATGGG
TTTTTTATTCCTGATGTTGAGTATTTGAAGGATCCAAAAGGCCTGCTTAC
TTATCTTGGTCTTAAGGTTAAGAGGGATTTCATGTGTTTATACTGCAATG
ATAGGTGCCATCCTTTTAACAGCTTGGAAGCAGTTAGGAAGCATATGGAA
GCAAAACGTCATTGCAAAATACATTTCGGCGATGGTGATGACGAGGAGGA
GGCCGAGTTAGAAGAGTTCTATGACTATAGCAGCAGTTACATGGATGAGG
ATGGGAAACAGCTGATCTCATCCAGTGACATGGCCAACACTGTAGAGCTT
GGTGGTGGGTCTGAGCTTATCATAACAAAGAGAACAGATAAAGGAACATC
GACTAAAACGTTCGGCTCCCGTGAATATCTGCGGTATTATCGCCAGAAAC
CCCGCCCGTCACCGGCAAATAATGTGGCCATTACAGCTGCGCTGGCCTCA
AGGTACAAGAGCATGGGATTAGCAACCGTGCAAACTAGAGAGCTCATGGT
GAGGATGACGGTAATCAATGAGATGAATAGAACGGGAGTGG
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