CF834136

Overview
NameCF834136
Unique NameCF834136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834136_ssr169 microsatellite CF834136_ssr169:169..182. BLAST: Citrus ESTs to Prunus persica proteins V1
CF834136_ssr138 microsatellite CF834136_ssr138:138..161. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALFC3_ARATH (Probable fructose-bisphosphate aldolase 3, chloroplastic OS=Arabidopsis thaliana GN=FBA3 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.284e-56
Identity = 104/119 (87.39%), Postives = 115/119 (96.64%), Query Frame = 2
Query:  188 KASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 544
            KASPET+A +TLTMLKRRVPPAVPGIMFLSGGQSE EATLNLNAMNQ+PNPWHVSFSYARALQN+VL+TWQG+PE  EA+QK+LLVRAKANSLAQLGKYSAEGE+E+AKKGMFV+GYTY
Sbjct:  273 KASPETVADFTLTMLKRRVPPAVPGIMFLSGGQSEAEATLNLNAMNQSPNPWHVSFSYARALQNSVLRTWQGKPEKIEASQKALLVRAKANSLAQLGKYSAEGENEDAKKGMFVKGYTY 391          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALFC2_ARATH (Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.327e-53
Identity = 99/120 (82.50%), Postives = 109/120 (90.83%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 544
            ++A+PE +A YTL +L+ RVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNT LKTW GRPEN  AAQ +LL RAKANSLAQLGKY+ EGESEEAK+GMFV+GYTY
Sbjct:  279 DRATPEQVAAYTLKLLRNRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWGGRPENVNAAQTTLLARAKANSLAQLGKYTGEGESEEAKEGMFVKGYTY 398          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALFC1_ARATH (Probable fructose-bisphosphate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=FBA1 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 6.684e-51
Identity = 95/120 (79.17%), Postives = 108/120 (90.00%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 544
            ++A+PE +A YTL +L+ R+PPAVPGIMFLSGGQSE+EATLNLNAMNQAPNPWHVSFSYARALQNT LKTW G+ EN +AAQ  LL RAKANSLAQLGKY+ EGESEEAK+GMFV+GYTY
Sbjct:  280 DRATPEQVASYTLKLLRNRIPPAVPGIMFLSGGQSELEATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWGGKEENVKAAQDILLARAKANSLAQLGKYTGEGESEEAKEGMFVKGYTY 399          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALFC1_PEA (Fructose-bisphosphate aldolase 1, chloroplastic (Fragment) OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.261e-49
Identity = 93/120 (77.50%), Postives = 108/120 (90.00%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 544
            +KASP  +A+YTL +L RR+PPAVPGIMFLSGGQSEVEATLNLNAMN++PNPWHVSFSYARALQNT LKTW G PEN +AAQ++LL RAK+NSLAQLGKY  +GESEEAKK +FV+GY+Y
Sbjct:  237 DKASPTKVAEYTLNLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNKSPNPWHVSFSYARALQNTALKTWGGLPENVKAAQEALLFRAKSNSLAQLGKYYGDGESEEAKKELFVKGYSY 356          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALFC_ORYSJ (Fructose-bisphosphate aldolase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0171300 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.394e-48
Identity = 90/120 (75.00%), Postives = 107/120 (89.17%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 544
            ++A+PE ++ YTL +L RR+PPAVPGIMFLSGGQSEVEAT NLNAMNQ PNPWHVSFSYARALQNT LKTW G+PEN +AAQ +LL+RAKANSLAQLGKY+++GE+ EAK+GMFV+ Y Y
Sbjct:  269 DRATPEQVSDYTLKLLHRRIPPAVPGIMFLSGGQSEVEATQNLNAMNQGPNPWHVSFSYARALQNTCLKTWGGQPENVKAAQDALLLRAKANSLAQLGKYTSDGEAAEAKEGMFVKNYVY 388          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALFC2_PEA (Fructose-bisphosphate aldolase 2, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.304e-46
Identity = 91/120 (75.83%), Postives = 105/120 (87.50%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 544
            +KASP  +A+YTL +L RR+PPAVPGIMFLSGGQSEVEATLNLNAMN++PNPWHVSFSYARALQNT LKTW G PEN +AAQ++LL RAK+NSLAQLGKY  +GESEEAKK    +GY+Y
Sbjct:  231 DKASPTKVAEYTLNLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNKSPNPWHVSFSYARALQNTALKTWGGLPENVKAAQEALLFRAKSNSLAQLGKYIGDGESEEAKKDC-CQGYSY 349          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALFC_SPIOL (Fructose-bisphosphate aldolase, chloroplastic OS=Spinacia oleracea PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 7.175e-37
Identity = 80/115 (69.57%), Postives = 87/115 (75.65%), Query Frame = 2
Query:  188 KASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVR 532
            K  PE +A Y L +L RR  P VPGIM LSGGQSEVEATLNLNAMNQ+PNPWHVSFSYARALQNT LKTW    EN +A        AK+NSLAQLGKY+ EGESEE KK MFV+
Sbjct:  278 KGPPEQVADYPLKLLHRRRGPVVPGIMVLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTCLKTWVEGQENVKAQD---FACAKSNSLAQLGKYTGEGESEERKKDMFVK 389          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALFC_CHLRE (Fructose-bisphosphate aldolase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALDCHL PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.308e-35
Identity = 77/119 (64.71%), Postives = 89/119 (74.79%), Query Frame = 2
Query:  188 KASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 544
            KA P  +A+YTL ML  R PP VPGIMFLSGGQSE+E+TLNLNAMNQ+PNPWHVSFSYARAL NTVLKTWQ  P   +A + +   R KANS AQ GKY A  E +EA +GM+ +G  Y
Sbjct:  256 KAGPAKVAEYTLKMLAARAPP-VPGIMFLSGGQSELESTLNLNAMNQSPNPWHVSFSYARALTNTVLKTWQASPRTVQAPRLAAQAR-KANSDAQQGKYDATTEGKEAAQGMYEKGKGY 372          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF_DICDI (Fructose-bisphosphate aldolase OS=Dictyostelium discoideum GN=fba PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.074e-32
Identity = 68/120 (56.67%), Postives = 88/120 (73.33%), Query Frame = 2
Query:  188 KASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPN-PWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 544
            KA+ E I K+T+  L+R VPPA+ G++FLSGGQ+E+EAT NLNAMN  PN PW +SFSY RALQ +V+ TW+G   N EAA+K  L RAK NSLAQLGKY+ E  +  A + ++V+ Y Y
Sbjct:  238 KATSEQIGKFTVRTLQRTVPPALTGVVFLSGGQTEIEATANLNAMNVLPNRPWALSFSYGRALQASVISTWKGESANVEAARKVYLHRAKCNSLAQLGKYTGEESTGSASESLYVKDYKY 357          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF_SPIOL (Fructose-bisphosphate aldolase, cytoplasmic isozyme OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 68/122 (55.74%), Postives = 83/122 (68.03%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMN--QAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 544
            +K +PE IA+YT+  L+R VP AVPG+MFLSGGQSE EATLNLNAMN  +   PW +SFSY RALQ + LK WQG+ EN   AQ+  L RAK NS A LGKY       +A + + V+ Y Y
Sbjct:  236 KKVTPEVIAEYTVRTLQRTVPQAVPGVMFLSGGQSEEEATLNLNAMNKLETKKPWTLSFSYGRALQQSTLKAWQGKEENVAKAQEVFLARAKGNSEATLGKYQGGAGGADASESLHVKDYKY 357          
The following BLAST results are available for this feature:
BLAST of CF834136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ALFC3_ARATH5.284e-5687.39Probable fructose-bisphosphate aldolase 3, chlorop... [more]
ALFC2_ARATH9.327e-5382.50Probable fructose-bisphosphate aldolase 2, chlorop... [more]
ALFC1_ARATH6.684e-5179.17Probable fructose-bisphosphate aldolase 1, chlorop... [more]
ALFC1_PEA1.261e-4977.50Fructose-bisphosphate aldolase 1, chloroplastic (F... [more]
ALFC_ORYSJ1.394e-4875.00Fructose-bisphosphate aldolase, chloroplastic OS=O... [more]
ALFC2_PEA1.304e-4675.83Fructose-bisphosphate aldolase 2, chloroplastic OS... [more]
ALFC_SPIOL7.175e-3769.57Fructose-bisphosphate aldolase, chloroplastic OS=S... [more]
ALFC_CHLRE2.308e-3564.71Fructose-bisphosphate aldolase 1, chloroplastic OS... [more]
ALF_DICDI4.074e-3256.67Fructose-bisphosphate aldolase OS=Dictyostelium di... [more]
ALF_SPIOL3.449e-3155.74Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04P21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834136 ID=CF834136; Name=CF834136; organism=Citrus sinensis; type=EST; length=723bp
CAGAGAAGAAAATTCTCTCACTTTGAAATCCCCATCTTCCCATTTATTTT
TCCGCCACTTTCTCGGGAAAAATCGCTGTTACAGCATTGTTTGGCAACTT
TTATTACGTTGACTCTCAAGAGATCTGAGGAGGCGGCTTATTATTATTAT
TATTATTATTATTTTAGACTCTCTCTCTCTCTCGGAGAAGGCCTCTCCAG
AGACCATTGCTAAATATACACTTACAATGCTCAAGAGGAGAGTACCCCCT
GCAGTCCCAGGAATCATGTTTTTGTCTGGAGGACAATCAGAAGTGGAAGC
AACATTGAACTTGAATGCGATGAACCAAGCCCCCAACCCCTGGCACGTGT
CCTTTTCTTATGCCCGGGCGCTTCAGAACACTGTTCTTAAGACATGGCAA
GGTCGTCCTGAGAATACTGAAGCTGCACAAAAGTCACTATTGGTGCGTGC
AAAGGCAAATTCCTTGGCGCAGCTTGGGAAGTATTCCGCAGAAGGTGAAA
GCGAGGAAGCCAAGAAAGGAATGTTTGTCAGGGGCTACACTTACTAAGCC
AATAATATACTATGCAGTTTGAGCTTGCCTGAGGCAACTCATGACACTTG
TGTCATTGTGCACTTGCTTTTGTTTTGGTTCCTTCCCTTTTTTTTAAAAT
TTTTTTGGGATACGGACAAGATTTCTATTAGAAGTTTTTTCATTTTCTTT
TATCCACCTAATAAATAGAGAGC
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