CF834139

Overview
NameCF834139
Unique NameCF834139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11296 contig Csv1_Contig11296:512..1248. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834139 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 7.595e-90
Identity = 157/183 (85.79%), Postives = 166/183 (90.71%), Query Frame = -2
Query:  188 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYN 736
            AATKKAGEEI HTYNHIYGL+ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT+YRGKN VDLARDFTYIDDIVKGCLGSLD           KRG APYRIFNLGNTSPVTVP LV+ILE+HLKVKAK+N +EMPGNGDVPFTHANISSA+ EFGY+PTTDL+TGLKKFVRWYLSYYGYN
Sbjct:  240 AATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRGKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILVDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLSYYGYN 422          
BLAST of CF834139 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.802e-76
Identity = 139/188 (73.94%), Postives = 158/188 (84.04%), Query Frame = -2
Query:  173 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGKRV 736
            AATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+++ G NH  +ARDFTYIDDIVKGCLG+LD           KRG A  R+FNLGNTSPV V  LV+ILER LKVKAK+N++++P NGDVPFTHANISSAQ+EFGY+P+TDLQTGLKKFVRWYL YY    GK+V
Sbjct:  244 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYLGYYKQG-GKKV 430          
BLAST of CF834139 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.779e-76
Identity = 137/180 (76.11%), Postives = 151/180 (83.89%), Query Frame = -2
Query:  197 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 736
            AATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK I+++   NH  +ARDFTYIDDIVKGCL +LD           KRGPA  R+FNLGNTSPV V  LV ILER LKVKAKKN+I+MP NGDVPFTHANIS AQ+E GY+PTTDLQTGLKKFVRWYLSYY
Sbjct:  249 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 428          
BLAST of CF834139 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.901e-75
Identity = 137/187 (73.26%), Postives = 154/187 (82.35%), Query Frame = -2
Query:  176 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGKR 736
            AATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+++ G NH  +ARDFTYIDDIVKGCLG+LD           KRG A  R+FNLGNTSPV V  LV ILER LKVKAK+N++++P NGDV FTHANISSAQ+E GY+PTTDLQTGLKKF RWYL Y  YN GK+
Sbjct:  243 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYLGY--YNGGKK 427          
BLAST of CF834139 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.140e-69
Identity = 124/181 (68.51%), Postives = 149/181 (82.32%), Query Frame = -2
Query:  194 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYG 736
            AATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL GK I +YR +++ ++ARDFTYIDDIVKGC+G+LD           KRG A  R++NLGNTSPV V +LV+ILE  L  KAKK++I+MP NGDVP+THAN+S A K+FGY+PTTDL  GL+KFV+WY+ YYG
Sbjct:  264 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYYG 444          
BLAST of CF834139 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.646e-68
Identity = 124/186 (66.67%), Postives = 148/186 (79.57%), Query Frame = -2
Query:  179 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGK 736
            AATKKAGE IAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK ITV+   +   +ARDFTYIDDIVKGCLG+LD           K+GPA +RI+NLGNTSPV V KLV ILE+ LK+KAKK ++ +P NGDV FTHANI+ AQ E GY+P  DL+TGLKKFV+WY+ +Y  ++ K
Sbjct:  248 AATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKWYMGFYTGSKKK 433          
BLAST of CF834139 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.452e-40
Identity = 85/186 (45.70%), Postives = 117/186 (62.90%), Query Frame = -2
Query:  197 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGP------APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 736
            AATKK+ E +AHTY+H+Y L  TGLRFFTVYGPWGRPDMA F FT+ I+  + I VY   NH ++ RDFTY+DDIV+  +  L               P      APY+++N+GN SPV + + V  +E  L  +A+KN +++   GDVP T+AN+    ++  ++P T +Q G+ KFV WYL YY
Sbjct:  152 AATKKSNELMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVY---NHGNMMRDFTYVDDIVE-AISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQ-PGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY 332          
BLAST of CF834139 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.226e-40
Identity = 86/185 (46.49%), Postives = 116/185 (62.70%), Query Frame = -2
Query:  197 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGP-----APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 736
            AATKKA E +AHTY+H+YGL  TGLRFFTVYGPWGRPDMA F FT+ +L+GK I VY   N+  + RDFTYIDDI +  +   D           + G      APYR++N+GN+SPV +   +  LE  L ++AKKN++ +   GDV  T A+  +  +  G+ P T ++ G+K FV WY  +Y
Sbjct:  152 AATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVY---NYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ-PGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFY 332          
BLAST of CF834139 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.955e-38
Identity = 79/177 (44.63%), Postives = 115/177 (64.97%), Query Frame = -2
Query:  206 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 736
            A+TK++ E +AH Y+H+YG+ + GLRFFTVYG +GRPDMAYF F +NIL GK I VY   N+ ++ RDFTYI D+V G L ++             +    Y IFNLGN+ PV +   + ++E++L  KAKK  + M  +GDV  T+A++S ++K  GY+P   ++ GLK+F  W+L
Sbjct:  158 ASTKRSNELMAHVYHHLYGIKMIGLRFFTVYGEYGRPDMAYFKFAKNILLGKEIEVY---NYGNMERDFTYISDVVDGILRAI-------------KKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQ-DGDVLRTYADLSKSEKLLGYKPKVTIEEGLKRFCNWFL 317          
BLAST of CF834139 vs. ExPASy Swiss-Prot
Match: LPSL_RHIME (UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti GN=lspL PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28
Identity = 71/186 (38.17%), Postives = 102/186 (54.84%), Query Frame = -2
Query:  197 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL------GSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 736
            AATKK+ E +AH+Y H+Y +  T  RFFTVYGPWGRPDMA F F   I  G+PI +Y G+    ++RDFTYIDD+V+  +       S +               AP+R+ N G   PV +   V  +E+ +   A  N++ M   GDVP T A+    +   G++P+  ++ G+ +FV WY   Y
Sbjct:  153 AATKKSMELMAHSYAHLYKVPTTSFRFFTVYGPWGRPDMALFKFVDAIHNGRPIDIY-GEGR--MSRDFTYIDDLVESIVRLSHVPPSEENRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPMQ-QGDVPRTFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNY 334          
The following BLAST results are available for this feature:
BLAST of CF834139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GAE1_ARATH7.595e-9085.79UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
GAE2_ARATH2.802e-7673.94UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE4_ARATH4.779e-7676.11UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE3_ARATH6.901e-7573.26UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE6_ARATH1.140e-6968.51UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
GAE5_ARATH1.646e-6866.67UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
CAPI_STAAU1.452e-4045.70Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
YCL2_ECO114.226e-4046.49Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
Y1055_METJA3.955e-3844.63Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
LPSL_RHIME8.266e-2838.17UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04P24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834139 ID=CF834139; Name=CF834139; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTCCCTTACAACGTTTTCTGTTCCTTTCGTTTTTT
TTAAGGAAAAAAACAAAAAAAAAAAACCCTCTAATCCCGCACCTCCCACG
GCGCGAAAACCCAAAAAAAAAAGAAAAAAAGAAGGTAAAACGCAAAAAAC
ATAAAGGAAAAAAAAATTAATTTACACGTTTGCCACGATTATAGCCGTAA
TATGAGAGATACCATCTAACAAATTTTTTCAAGCCGGTTTGCAAATCCGT
CGTGGGCCTGTACCCGAACTCCTTCTGGGCCGAACTGATATTCGCATGCG
TGAACGGGACGTCGCCGTTTCCAGGCATTTCGATTACATTCTTCTTGGCT
TTTACCTTCAGGTGTCTCTCCAATATATTCACCAGCTTAGGTACCGTGAC
CGGTGACGTGTTCCCCAAATTAAAGATCCGGTACGGTGCTGGGCCCCGCT
TCTTTCCGCCCGACCCGGTACTCTTACCCGAGGTATCCAGCGAACCTAAA
CAACCCTTCACGATATCGTCAATGTAAGTAAAATCTCGTGCCAAGTCGAC
GTGATTCTTCCCACGATAAACCGTGATTGGTTTGCCTTGGAGAATATTTC
TCGTGAACGAGAAGTAAGCCATATCGGGTCGGCCCCAGGGTCCGTACACG
GTGAAAAACCTCAGCCCGGTAATTGAGAGGCCGTAAATGTGATTGTAGGT
GTGAGCAATTTCTTCACCGGCCTTTTTGGTAGCCGCG
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