CF834140

Overview
NameCF834140
Unique NameCF834140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834140_ssr71 microsatellite CF834140_ssr71:71..82. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11400 contig Csv1_Contig11400:42..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 4.510e-107
Identity = 188/220 (85.45%), Postives = 207/220 (94.09%), Query Frame = 2
Query:  131 MPSLEDELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVDSGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            MPS+EDELFPSTPGKFKI+RSN   RQ HRCF STSTMFLWALFL+ALTASYLSFQSFVDSGSRY +ASWGGIQWEK VR+SAQIHRSGG+SVLVTGA GFVG+HVSLAL+KRGDGVVGLDNFNNYYDPSLK+AR++LL++ GIFV+EGD+NDAKLLAKLFD VAFTHVMHLAAQAGVRYA++NP SYVHSNIAGLV LLE CK+ANPQP+IVWASSSSV
Sbjct:    1 MPSIEDELFPSTPGKFKIDRSN---RQLHRCFASTSTMFLWALFLIALTASYLSFQSFVDSGSRYLTASWGGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSV 217          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.419e-68
Identity = 143/228 (62.72%), Postives = 163/228 (71.49%), Query Frame = 2
Query:  131 MPSLEDELFPSTPGKFKIERSNTMNRQFHRCF--TSTSTMFLWALFLVALTASYLSFQSFVDSGSRYFSA------SWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            M  L+D   PSTPGKFK          FHR    +S + +  W+L  V L   +  ++S V S     S       SWGG  WEK VRSSA++    G SVLVTGAAGFVGTHVS ALK+RGDGV+GLDNFN+YYDPSLK+AR+ALL   G+FV+EGDINDA LL KLF+ V FTHVMHLAAQAGVRYAM+NP SYVHSNIAG V LLE CKSANPQP+IVWASSSSV
Sbjct:    4 MSHLDD--IPSTPGKFK--------PYFHRTRWQSSVAKLAFWSLVFVGLIFIFF-YRSPVSSNPADPSRRSLRTYSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSV 220          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.039e-68
Identity = 138/223 (61.88%), Postives = 160/223 (71.75%), Query Frame = 2
Query:  131 MPSLEDELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTAS--YLSFQSFVDSGSRYFSA-SWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            M  L+D   PSTPGKFK+   +       R  +S + +  W+L    L     Y S  S  DS  R     SWGG  WEK VRSSA++    G+SVLVTGAAGFVGTHVS ALK+RGDGV+GLDNFN+YYD SLK++R+ALL   G+F++EGDIND  LL KLF+ V FTHVMHLAAQAGVRYAM+NP SYVHSNIAG V LLE CKSANPQP+IVWASSSSV
Sbjct:    1 MSHLDD--IPSTPGKFKMMDKSPFFLHRTRWQSSVAKLAFWSLVFFGLLFIFFYRSPISNPDSSRRSLRTYSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSV 221          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.568e-67
Identity = 137/228 (60.09%), Postives = 162/228 (71.05%), Query Frame = 2
Query:  131 MPSLEDELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYL--------SFQSFVDSGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            M  L+D   PSTPGK+K ++        H  +   S + LWA   +AL   YL        S ++  DS S   +A +GG  WEK VR SA+    GG++VLVTGA+GFVGTHVS+AL++RGDGV+GLDNFN YYDP LK+AR+ LL   G+FV+EGDINDA LL KLFD V FTHVMHLAAQAGVRYAMQNP SYV+SNIAG V LLE  KSANPQP+IVWASSSSV
Sbjct:    1 MSHLDD--LPSTPGKYKTDKVPPYGILHHHRYLRLSKLTLWASLFLALFLFYLVLSPPPSPSRRNLNDSSS-ISAAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGLDNFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQAGVRYAMQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSV 225          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.327e-66
Identity = 137/228 (60.09%), Postives = 169/228 (74.12%), Query Frame = 2
Query:  131 MPSLEDELFPSTPGKFKIERSNTMNR-QFHRCFTSTSTMFLWALFLVAL----TASYLSFQSFVDSGSRYFSAS-WGGIQWEKHVRSSAQIHRS--GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            M  L+D   PS+PGKFK+E+S+ ++R +F    T  +    + L L++L    +   ++  S  D   R    + +GG  WEK +RSSA+I  S   G++VLVTGAAGFVGTHVS ALK+RGDGV+GLDNFN+YYDPSLK+AR+ALL   GIF++EGDIND +LL KLF  V+FTHVMHLAAQAGVRYAM+NP SYVHSNIAG V LLE CKS NPQP+IVWASSSSV
Sbjct:    1 MSRLDD--IPSSPGKFKMEKSSYLHRLRFQSSLTKFAFFSFFLLCLISLLFLRSPPSINPSSPSDPSRRSLRTNTYGGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGLDNFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSV 226          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.136e-60
Identity = 125/228 (54.82%), Postives = 155/228 (67.98%), Query Frame = 2
Query:  179 KIERSNTMNRQFH--RCFTSTSTMFLWALFLVALT-------------------ASYLSFQSFVDSG---SRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            K+ER N+  R+ H  +   ++S +   A  LVAL                    A +L  +SF+ +G   S   S+S GG  WEK VR S+   R  G+SVLVTGAAGFVG+H SLAL+KRGDGV+G DNFN+YYDPSLK+AR+ LL    +F++EGD+ND  LL KLFD V FTH++HLAAQAGVRYAM+NP SY+ SNIAG V LLE  K+ANPQP+IVWASSSSV
Sbjct:   14 KLERYNSYLRKIHSTKVLNASSKVLFRATLLVALVLVLIFAINYPPLSDSRAAAAHHLHRRSFLSTGLFSSSSSSSSIGGAAWEKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANPQPAIVWASSSSV 241          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.470e-22
Identity = 58/130 (44.62%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  401 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            M  LVTGAAGF+G HVS  L + G  VVG+DN N+YYD SLK+AR  LL   G    + D+ D + +  LF +  F  V     +  VRY+++NPH+Y  SN+ G + +LE C+  N    +++ASSSSV
Sbjct:    1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH-NKIQHLLYASSSSV 129          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.184e-20
Identity = 52/130 (40.00%), Postives = 84/130 (64.62%), Query Frame = 2
Query:  401 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            M +L+TG AGF+G+H++  L K+G  V+G+D+ N+YY  SLK+ R   +        +  + +   L+K+F       V++LAAQAGVRY+++NP +Y+ SNI G + +LE  +  N Q ++++ASSSSV
Sbjct:    1 MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ-NLIYASSSSV 129          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.758e-18
Identity = 53/132 (40.15%), Postives = 82/132 (62.12%), Query Frame = 2
Query:  404 SVLVTGAAGFVGTHVSLALKKRGDG--VVGLDNFNNYYDPSLKKARKALLNNHGIFV-IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            ++LVTG+AGF+G H+S  L    +   V+G+DN NNYY+P LK+ R  +L N+  +  I+ D +D   L +         ++HL AQAGVRY++QNP +Y+ SN  G + + E  +  + +  +V+ASSSSV
Sbjct:    5 NILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDIE-KVVYASSSSV 135          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: LPSL_RHIME (UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti GN=lspL PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.999e-18
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 2
Query:  401 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLN-NHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            M  L+TG AGF+G HV+  L   G  VVG D    YYD +LK+ R A+L  ++G   +   + D   L +  +      ++HLAAQAGVRY+++NP +YV +N+ G   +LE  K+  P+  ++ AS+SS+
Sbjct:    1 MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTAMLEDRAALDRAAELAEPEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK-HLMLASTSSI 130          
The following BLAST results are available for this feature:
BLAST of CF834140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GAE1_ARATH4.510e-10785.45UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
GAE3_ARATH2.419e-6862.72UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE2_ARATH7.039e-6861.88UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE5_ARATH1.568e-6760.09UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
GAE4_ARATH1.327e-6660.09UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE6_ARATH4.136e-6054.82UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
YCL2_ECO114.470e-2244.62Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
CAPI_STAAU4.184e-2040.00Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
Y1055_METJA1.758e-1840.15Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
LPSL_RHIME2.999e-1838.93UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04P24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834140 ID=CF834140; Name=CF834140; organism=Citrus sinensis; type=EST; length=792bp
CATCTATTACTCTTCACACCATTTCAATCCAATCCAAAACCAAATCCAAC
CCGGTTTCACCTTTCCTTCTAAACAAACAAACCAACCCAGAAAAGGGAAA
ATAATAAAGATTCGAAGATTCTAGAGAAAAATGCCGTCTTTAGAAGATGA
GCTGTTCCCGTCGACGCCGGGGAAATTCAAGATTGAAAGATCCAACACTA
TGAACCGCCAGTTTCACCGGTGTTTCACCTCAACGAGTACCATGTTCTTG
TGGGCTCTTTTCTTGGTTGCTTTAACGGCGTCGTATTTGAGTTTTCAGTC
TTTTGTCGATTCCGGTAGCCGGTACTTTTCCGCTTCTTGGGGAGGTATCC
AGTGGGAGAAACATGTCAGGAGCTCCGCTCAGATCCATCGGTCTGGTGGG
ATGTCGGTGCTGGTTACCGGTGCAGCCGGTTTCGTTGGGACCCACGTGTC
TTTGGCTTTAAAGAAACGCGGAGACGGCGTCGTTGGACTCGACAATTTCA
ATAACTACTACGATCCCTCATTGAAGAAGGCGAGGAAGGCTTTGTTGAAC
AACCATGGCATTTTTGTAATTGAAGGTGATATCAATGACGCGAAATTATT
AGCCAAGCTCTTTGACGCTGTGGCTTTTACGCACGTGATGCATTTAGCGG
CTCAAGCCGGTGTTAGATACGCGATGCAGAATCCCCACTCGTACGTGCAC
AGCAATATCGCTGGCCTCGTCACGCTCCTTGAGGCTTGCAAATCAGCCAA
TCCTCAGCCGTCGATTGTGTGGGCCTCGTCGAGCTCAGTCTA
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