CF834146

Overview
NameCF834146
Unique NameCF834146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834146_ssr551 microsatellite CF834146_ssr551:551..560. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig161 contig Csv1_Contig161:83..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834146 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.065e-48
Identity = 104/176 (59.09%), Postives = 129/176 (73.30%), Query Frame = 3
Query:   36 MATVSPIRS-SLSVFNKIL----RSNSQLSPPHPQLS-----KGFSTSSVQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVI 533
            MA     RS   S+  K L    RSN+  S   P LS     + ++T+S  KEQK+KVPL ++G SGNYASALY+AAVK+N LEKVESE+ DLVEASKK+ T+ QF +D SVP +TRV AI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VI
Sbjct:    1 MAMTGRARSMGFSILQKALSSAQRSNAHRSILCPTLSNSELLRNYATASASKEQKIKVPLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKKSPTFSQFMRDPSVPVDTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVI 176          
BLAST of CF834146 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.111e-37
Identity = 83/162 (51.23%), Postives = 116/162 (71.60%), Query Frame = 3
Query:   57 RSSLSVFNKILRSNSQLSPPHPQLS---KGFSTSSVQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVI 533
            RS +S F  I  ++S  S     L    + ++T+S Q    VKVP+AL G +GN+AS LYIAAVK N+LEK+E+++ +++EA K A  + QFTKD SVP  TR+ AI + C QAKF++ TK+FL +LAENG+L+NLD I K+F++LT AH+G+VKV VT+VI
Sbjct:    6 RSGISFFKTIAVTDSVSSVRSKSLFPALRTYATASAQTTANVKVPIALVGENGNFASWLYIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVI 167          
BLAST of CF834146 vs. ExPASy Swiss-Prot
Match: ATPO_PONAB (ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 52/131 (39.69%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  138 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTS 527
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +  AH+GEV  TVTS
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAAPVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTS 145          
BLAST of CF834146 vs. ExPASy Swiss-Prot
Match: ATPO_HUMAN (ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 51/131 (38.93%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  138 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTS 527
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVTS
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTS 145          
BLAST of CF834146 vs. ExPASy Swiss-Prot
Match: ATPO_RHIFE (ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  138 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTS 527
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            +    +VK++N++ T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  +VT+
Sbjct:   16 FSTSVVRPFTKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQLLKEPKMAASIMNPY-IKRSIKVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTT 145          
BLAST of CF834146 vs. ExPASy Swiss-Prot
Match: ATPO_BOVIN (ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 49/131 (37.40%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  138 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTS 527
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK+++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+
Sbjct:   16 FSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTT 145          
BLAST of CF834146 vs. ExPASy Swiss-Prot
Match: ATPO_SORAR (ATP synthase subunit O, mitochondrial OS=Sorex araneus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  132 KGFSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTS 527
            + FSTS  +   K V+ P+ ++G  G YA+ALY AA K N L++VE E+L + +  K+            V    +VK+I ++  + K S +T + + +LAENGRL N   I   F  +   H+GEV  TVT+
Sbjct:   14 RSFSTSVARPFAKLVRPPIQIYGVEGRYATALYSAASKQNKLDQVEKELLRVAQLLKEPKLAASILNP-HVKRAIKVKSIGDLTAREKLSPITTNLINLLAENGRLNNTPGIISAFSTMMSVHRGEVPCTVTT 145          
BLAST of CF834146 vs. ExPASy Swiss-Prot
Match: ATPO_RAT (ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 48/133 (36.09%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  132 KGFSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTS 527
            + FSTS V+   K V+ P+ ++G  G YA+ALY AA K   L++VE E+L + +  K             +    +VK++ +I T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+
Sbjct:   14 RSFSTSVVRPFSKLVRPPVQVYGIEGRYATALYSAASKQKRLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMSVHRGEVPCTVTT 145          
BLAST of CF834146 vs. ExPASy Swiss-Prot
Match: ATPO_MOUSE (ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  132 KGFSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTS 527
            + FSTS V+   K V+ P+ ++G  G YA+ALY AA K   L++VE E+L + +  K             +    +VK++N+I  + KFS +T + + +LAENGRL N   I   F  +   H+GEV  TVT+
Sbjct:   14 RSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEVPCTVTT 145          
BLAST of CF834146 vs. ExPASy Swiss-Prot
Match: ATPO_PIG (ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14
Identity = 47/131 (35.88%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  138 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTS 527
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK+++++  + KFS +T + + +LAENGRL +   +   F  +   H+GEV  +VT+
Sbjct:   16 FSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASIMNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTT 145          
The following BLAST results are available for this feature:
BLAST of CF834146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ATPO_IPOBA9.065e-4859.09ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH1.111e-3751.23ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
ATPO_PONAB1.081e-1639.69ATP synthase subunit O, mitochondrial OS=Pongo abe... [more]
ATPO_HUMAN2.408e-1638.93ATP synthase subunit O, mitochondrial OS=Homo sapi... [more]
ATPO_RHIFE4.107e-1637.40ATP synthase subunit O, mitochondrial OS=Rhinoloph... [more]
ATPO_BOVIN2.038e-1537.40ATP synthase subunit O, mitochondrial OS=Bos tauru... [more]
ATPO_SORAR7.746e-1536.09ATP synthase subunit O, mitochondrial OS=Sorex ara... [more]
ATPO_RAT1.012e-1436.09ATP synthase subunit O, mitochondrial OS=Rattus no... [more]
ATPO_MOUSE1.012e-1436.84ATP synthase subunit O, mitochondrial OS=Mus muscu... [more]
ATPO_PIG1.321e-1435.88ATP synthase subunit O, mitochondrial OS=Sus scrof... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05A07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834146 ID=CF834146; Name=CF834146; organism=Citrus sinensis; type=EST; length=628bp
CTGAACTGGGCCTATTAAGGTTTTTAATTTAGGAAATGGCAACGGTAAGT
CCTATCAGATCGAGCCTCTCTGTATTCAACAAGATTCTCAGATCCAATTC
TCAGCTATCCCCTCCTCATCCACAGTTATCGAAAGGTTTTTCCACTTCGT
CGGTGCAGAAGGAGCAGAAAGTTAAGGTGCCTCTGGCTTTGTTTGGAGGT
TCAGGAAATTATGCCTCTGCTCTGTACATTGCCGCAGTGAAAACTAACGC
ACTGGAGAAGGTTGAGTCTGAGATTCTTGACCTTGTCGAGGCTTCAAAGA
AGGCTGATACATATTTTCAGTTCACAAAGGACTTGTCTGTGCCTGCAGAG
ACAAGAGTTAAGGCCATTAACGAAATCTGTACTCAGGCTAAATTTTCAGA
TGTTACGAAGCACTTCTTAGTTGTTTTGGCTGAGAATGGGAGGCTTAGAA
ACTTAGACACCATCGCTAAGAGGTTTGTGGAGTTAACCATGGCACACAAG
GGCGAAGTAAAAGTTACTGTTACATCCGTTATTCCACTTCCCCCAGAAGA
AGAGAGAGAGTTGAAAGAGACACTGCAAGAGACACTTGGCCAAGGGAAGA
AAGTCAAGGTTGAACAGAAGGTTGATCC
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