CF834170

Overview
NameCF834170
Unique NameCF834170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834170 vs. ExPASy Swiss-Prot
Match: TIM9_ARATH (Mitochondrial import inner membrane translocase subunit Tim9 OS=Arabidopsis thaliana GN=TIM9 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 6.516e-40
Identity = 77/93 (82.80%), Postives = 87/93 (93.55%), Query Frame = -1
Query:  122 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFVKHSMRVGMRFAELNSQAATQE 400
            MD +M+AGLDGLPE+DKA+MA+MID LQLRDSLRMYNSLVERCF DCVD+FTRK+LQKQEETCVMRCAEKF+KH+MRVGMRFAELN  A TQ+
Sbjct:    1 MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQEETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93          
BLAST of CF834170 vs. ExPASy Swiss-Prot
Match: TIM9_ORYSJ (Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica GN=TIM9 PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 3.953e-37
Identity = 73/93 (78.49%), Postives = 80/93 (86.02%), Query Frame = -1
Query:  122 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFVKHSMRVGMRFAELNSQAATQE 400
            MDK+ML  LDGLPE+DK RMAAM+D LQ+RDSLRMYNSLVERCF DCVD F RKTL KQEE+CV RCAEKF+KHSMRVGMRFAELN   AT +
Sbjct:    1 MDKSMLGDLDGLPEEDKMRMAAMVDQLQIRDSLRMYNSLVERCFTDCVDTFRRKTLDKQEESCVRRCAEKFLKHSMRVGMRFAELNQGVATPD 93          
BLAST of CF834170 vs. ExPASy Swiss-Prot
Match: TIM9_MESCR (Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum GN=TIM9 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.563e-36
Identity = 71/93 (76.34%), Postives = 81/93 (87.10%), Query Frame = -1
Query:  122 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFVKHSMRVGMRFAELNSQAATQE 400
            MDKNML  LD LPE+DK +MA+MI+ LQ+RDSLRMYN+LVERCF DCVD+F RKTL KQEETCV RCAEKF+KHSMRVG+RFAELN  AAT +
Sbjct:    1 MDKNMLGDLDNLPEEDKLKMASMIEQLQIRDSLRMYNNLVERCFTDCVDSFRRKTLDKQEETCVKRCAEKFLKHSMRVGLRFAELNQGAATTD 93          
BLAST of CF834170 vs. ExPASy Swiss-Prot
Match: TIM9_ZYGBA (Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyces bailii GN=TIM9 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19
Identity = 38/79 (48.10%), Postives = 60/79 (75.95%), Query Frame = -1
Query:  140 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFVKHSMRVGMRFAELNS 376
            +D L  +++   + +I+H Q++D +R+Y++LVERCF DCV++FT   L  +E+TC+ RC+EKF+KHS RVG+RF E N+
Sbjct:    1 MDSLNPREQQEFSKLIEHKQMKDFMRLYSNLVERCFTDCVNDFTSSKLTSKEQTCISRCSEKFLKHSERVGLRFQEQNA 79          
BLAST of CF834170 vs. ExPASy Swiss-Prot
Match: TIM9_ASHGO (Mitochondrial import inner membrane translocase subunit TIM9 OS=Ashbya gossypii GN=TIM9 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.147e-18
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = -1
Query:  140 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFVKHSMRVGMRFAELNS 376
            +D L  +++     +++  Q++D +R+Y++LVERCF+DCV++FT   L  +E+TC+MRC+EKF+KHS RVG RF E N+
Sbjct:    1 MDALNSREQQEFQRVVEQKQMKDFMRLYSNLVERCFSDCVNDFTSSKLTSKEQTCIMRCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CF834170 vs. ExPASy Swiss-Prot
Match: TIM9_YEAST (Mitochondrial import inner membrane translocase subunit TIM9 OS=Saccharomyces cerevisiae GN=TIM9 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.156e-18
Identity = 36/79 (45.57%), Postives = 58/79 (73.42%), Query Frame = -1
Query:  140 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFVKHSMRVGMRFAELNS 376
            +D L  +++     +++  Q++D +R+Y++LVERCF DCV++FT   L  +E+TC+M+C+EKF+KHS RVG RF E N+
Sbjct:    1 MDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CF834170 vs. ExPASy Swiss-Prot
Match: TIM9_YARLI (Mitochondrial import inner membrane translocase subunit TIM9 OS=Yarrowia lipolytica GN=TIM9 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 36/79 (45.57%), Postives = 58/79 (73.42%), Query Frame = -1
Query:  140 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFVKHSMRVGMRFAELNS 376
            +D L  +++     +++  Q++D +R+Y+SLV+RCF DCV++FT K L  +EE+C+ +C+EKF+KHS RVG RF E N+
Sbjct:    1 MDQLNNREQQEFQQLVEQKQMKDFMRLYSSLVQRCFTDCVNDFTSKALSSREESCLEKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CF834170 vs. ExPASy Swiss-Prot
Match: TIM9_KLULA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Kluyveromyces lactis GN=TIM9 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.544e-17
Identity = 36/79 (45.57%), Postives = 58/79 (73.42%), Query Frame = -1
Query:  140 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFVKHSMRVGMRFAELNS 376
            +D L  +++     +++  Q++D +R+Y++LVERCF+DCV++FT   L  +E+ C+MRC+EKF+KHS RVG RF E N+
Sbjct:    1 MDQLNGKEQQEFQKIVEQKQMKDFMRLYSNLVERCFSDCVNDFTSAKLTSKEQNCIMRCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CF834170 vs. ExPASy Swiss-Prot
Match: TIM9_CANGA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Candida glabrata GN=TIM9 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.935e-17
Identity = 35/79 (44.30%), Postives = 57/79 (72.15%), Query Frame = -1
Query:  140 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFVKHSMRVGMRFAELNS 376
            +D L  +++     +++  Q++D +R+Y+ LVERCF DCV++FT   L  +EE+C+++C+EKF+KHS RVG RF E N+
Sbjct:    1 MDQLNAKEQQEFQKLVEQKQMKDFMRLYSGLVERCFTDCVNDFTSSKLTSKEESCILKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CF834170 vs. ExPASy Swiss-Prot
Match: TIM9_CRYNE (Mitochondrial import inner membrane translocase subunit TIM9 OS=Cryptococcus neoformans GN=TIM9 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.024e-16
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = -1
Query:  137 DKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFVKHSMRVGMRFAELNSQ 355
            ++A M+ +I+  Q++D +R+Y+ LVE+CFN C  +FT K L   E TCV  C +KF+KHS RVG RFAE N++
Sbjct:   10 EQAHMSKVIEKKQMQDFMRLYSGLVEKCFNACAQDFTSKALTTNETTCVQNCTDKFLKHSERVGARFAEHNAE 82          
The following BLAST results are available for this feature:
BLAST of CF834170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TIM9_ARATH6.516e-4082.80Mitochondrial import inner membrane translocase su... [more]
TIM9_ORYSJ3.953e-3778.49Mitochondrial import inner membrane translocase su... [more]
TIM9_MESCR2.563e-3676.34Mitochondrial import inner membrane translocase su... [more]
TIM9_ZYGBA6.341e-1948.10Mitochondrial import inner membrane translocase su... [more]
TIM9_ASHGO3.147e-1846.84Mitochondrial import inner membrane translocase su... [more]
TIM9_YEAST9.156e-1845.57Mitochondrial import inner membrane translocase su... [more]
TIM9_YARLI2.664e-1745.57Mitochondrial import inner membrane translocase su... [more]
TIM9_KLULA4.544e-1745.57Mitochondrial import inner membrane translocase su... [more]
TIM9_CANGA5.935e-1744.30Mitochondrial import inner membrane translocase su... [more]
TIM9_CRYNE5.024e-1649.32Mitochondrial import inner membrane translocase su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05A22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834170 ID=CF834170; Name=CF834170; organism=Citrus sinensis; type=EST; length=532bp
TTTTTTTTTTTTTTTTTGGCAAAAGCAGAAAATTAATAGCCACTAATCCT
TTCCAAAAGAAATTCTACAGGAATAAACCAAATGGTTTCTTGGCGCCGTT
AATGGTCGTCTGGGGATACTATTCTTGTGTAGCTGCTTGTGAATTGAGTT
CTGCAAACCTCATGCCAACGCGCATTGAGTGCTTCACAAATTTCTCAGCA
CAACGCATGACGCAGGTCTCCTCTTGCTTCTGTAGGGTCTTGCGTGTAAA
GTTGTCCACACAATCGTTGAAACATCTCTCCACAAGGGAGTTGTACATCC
TCAAACTGTCCCGTAATTGAAGATGGTCGATCATGGCAGCCATTCTAGCC
TTGTCCTGTTCGGGAAGACCATCAAGTCCAGCTAACATGTTCTTGTCCAT
TCCGGCTCCTTTTCTGTGGTGAATGTTGTTGAACTGAGAACTCACAGGTA
GGGTTTTGGGAAAGAGGGCTTTTCTTTCCTCTTTTATACTTCAGTCACCA
ATACGTTGTCGTCTCGTGTTCCTCTCTTTCCT
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