CF834171

Overview
NameCF834171
Unique NameCF834171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1478 contig Csv1_Contig1478:25..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_ARATH (Mitochondrial import inner membrane translocase subunit Tim9 OS=Arabidopsis thaliana GN=TIM9 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.576e-38
Identity = 75/93 (80.65%), Postives = 84/93 (90.32%), Query Frame = 3
Query:  135 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNSQAATQE 413
            MD +M+AGLDGLPE+DKA+MA+MID LQLRDSLRMYNSL ERCF DCVD FTRK+LQKQEETC MRCAEKFLKH+MRVGMRFA+LN  A TQ+
Sbjct:    1 MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQEETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93          
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_ORYSJ (Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica GN=TIM9 PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.169e-35
Identity = 71/93 (76.34%), Postives = 78/93 (83.87%), Query Frame = 3
Query:  135 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNSQAATQE 413
            MDK+ML  LDGLPE+DK RMAAM+D LQ+RDSLRMYNSL ERCF DCVD F RKTL KQEE+C  RCAEKFLKHSMRVGMRFA+LN   AT +
Sbjct:    1 MDKSMLGDLDGLPEEDKMRMAAMVDQLQIRDSLRMYNSLVERCFTDCVDTFRRKTLDKQEESCVRRCAEKFLKHSMRVGMRFAELNQGVATPD 93          
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_MESCR (Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum GN=TIM9 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.406e-34
Identity = 69/93 (74.19%), Postives = 78/93 (83.87%), Query Frame = 3
Query:  135 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNSQAATQE 413
            MDKNML  LD LPE+DK +MA+MI+ LQ+RDSLRMYN+L ERCF DCVD F RKTL KQEETC  RCAEKFLKHSMRVG+RFA+LN  AAT +
Sbjct:    1 MDKNMLGDLDNLPEEDKLKMASMIEQLQIRDSLRMYNNLVERCFTDCVDSFRRKTLDKQEETCVKRCAEKFLKHSMRVGLRFAELNQGAATTD 93          
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_ZYGBA (Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyces bailii GN=TIM9 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.011e-18
Identity = 38/79 (48.10%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  159 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNS 395
            +D L  +++   + +I+H Q++D +R+Y++L ERCF DCV+DFT   L  +E+TC  RC+EKFLKHS RVG+RF + N+
Sbjct:    1 MDSLNPREQQEFSKLIEHKQMKDFMRLYSNLVERCFTDCVNDFTSSKLTSKEQTCISRCSEKFLKHSERVGLRFQEQNA 79          
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_ASHGO (Mitochondrial import inner membrane translocase subunit TIM9 OS=Ashbya gossypii GN=TIM9 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.479e-17
Identity = 37/79 (46.84%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  159 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNS 395
            +D L  +++     +++  Q++D +R+Y++L ERCF+DCV+DFT   L  +E+TC MRC+EKFLKHS RVG RF + N+
Sbjct:    1 MDALNSREQQEFQRVVEQKQMKDFMRLYSNLVERCFSDCVNDFTSSKLTSKEQTCIMRCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_YEAST (Mitochondrial import inner membrane translocase subunit TIM9 OS=Saccharomyces cerevisiae GN=TIM9 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.012e-16
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  159 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNS 395
            +D L  +++     +++  Q++D +R+Y++L ERCF DCV+DFT   L  +E+TC M+C+EKFLKHS RVG RF + N+
Sbjct:    1 MDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_YARLI (Mitochondrial import inner membrane translocase subunit TIM9 OS=Yarrowia lipolytica GN=TIM9 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.727e-16
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  159 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNS 395
            +D L  +++     +++  Q++D +R+Y+SL +RCF DCV+DFT K L  +EE+C  +C+EKFLKHS RVG RF + N+
Sbjct:    1 MDQLNNREQQEFQQLVEQKQMKDFMRLYSSLVQRCFTDCVNDFTSKALSSREESCLEKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_KLULA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Kluyveromyces lactis GN=TIM9 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.024e-16
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  159 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNS 395
            +D L  +++     +++  Q++D +R+Y++L ERCF+DCV+DFT   L  +E+ C MRC+EKFLKHS RVG RF + N+
Sbjct:    1 MDQLNGKEQQEFQKIVEQKQMKDFMRLYSNLVERCFSDCVNDFTSAKLTSKEQNCIMRCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_CANGA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Candida glabrata GN=TIM9 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.562e-16
Identity = 35/79 (44.30%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  159 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNS 395
            +D L  +++     +++  Q++D +R+Y+ L ERCF DCV+DFT   L  +EE+C ++C+EKFLKHS RVG RF + N+
Sbjct:    1 MDQLNAKEQQEFQKLVEQKQMKDFMRLYSGLVERCFTDCVNDFTSSKLTSKEESCILKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_CRYNE (Mitochondrial import inner membrane translocase subunit TIM9 OS=Cryptococcus neoformans GN=TIM9 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.555e-15
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 3
Query:  180 DKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNSQ 398
            ++A M+ +I+  Q++D +R+Y+ L E+CFN C  DFT K L   E TC   C +KFLKHS RVG RFA+ N++
Sbjct:   10 EQAHMSKVIEKKQMQDFMRLYSGLVEKCFNACAQDFTSKALTTNETTCVQNCTDKFLKHSERVGARFAEHNAE 82          
The following BLAST results are available for this feature:
BLAST of CF834171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TIM9_ARATH3.576e-3880.65Mitochondrial import inner membrane translocase su... [more]
TIM9_ORYSJ2.169e-3576.34Mitochondrial import inner membrane translocase su... [more]
TIM9_MESCR1.406e-3474.19Mitochondrial import inner membrane translocase su... [more]
TIM9_ZYGBA7.011e-1848.10Mitochondrial import inner membrane translocase su... [more]
TIM9_ASHGO3.479e-1746.84Mitochondrial import inner membrane translocase su... [more]
TIM9_YEAST1.012e-1645.57Mitochondrial import inner membrane translocase su... [more]
TIM9_YARLI1.727e-1645.57Mitochondrial import inner membrane translocase su... [more]
TIM9_KLULA5.024e-1645.57Mitochondrial import inner membrane translocase su... [more]
TIM9_CANGA6.562e-1644.30Mitochondrial import inner membrane translocase su... [more]
TIM9_CRYNE5.555e-1547.95Mitochondrial import inner membrane translocase su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05A22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834171 ID=CF834171; Name=CF834171; organism=Citrus sinensis; type=EST; length=533bp
GAGGAAAGACCGTATACACGAGACGACAGCGGATTGGTGACTGAAGTATA
ACCCAGGAAAGAAAAGCCCTCTTTCCCAAAACCCTACCTCTGAGTTCTCA
GTTCAACAACATTCAACACAGAAAAGGAGCCGGAATGGACAAGAACATGT
TAGCTGGACTTGATGGTCTTCCCGAACAGGACAAGGCTAGAATGGCTGCC
ATGATCGACCATCTTCAATTACGGGACAGTTTGAGGATGTACAACTCCCT
TGAGGAGAGATGTTTCAACGATTGTGTGGACGACTTTACACGCAAGACCC
TACAGAAGCAAGAGGAGACCTGCGGCATGCGTTGTGCTGAGAAATTTCTG
AAGCACTCAATGCGCGTTGGCATGAGGTTTGCAAAACTCAATTCACAAGC
AGCTACACAAGAATAGTATCCCCAGACGACCATTAACGGCGCCAAGAAAC
CATTTGGTTTATTCCTGTAGAATTTCTTTTGGATCAAATTAGTGGCTATT
AATTTTCTGCTTTTGCCAAAAAAAAAAAAAAAA
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