CF834178

Overview
NameCF834178
Unique NameCF834178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2698 contig Csv1_Contig2698:566..1374. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834178 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.628e-75
Identity = 129/149 (86.58%), Postives = 139/149 (93.29%), Query Frame = -1
Query:  360 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 806
            RVPGV+KTEVGY+QG+LHNP+Y D+CSGTTNH+EVVRVQYDPK CSFD+LLD FW RHDPT LNRQGNDVGTQYRSGIYFYTPEQEKAA E+ ER QK LNR +VTEILPAKKFYRAEEYHQQYLAKGGRFGF+QSTEKGCNDPIRCYG
Sbjct:  111 RVPGVSKTEVGYTQGFLHNPTYNDICSGTTNHSEVVRVQYDPKACSFDSLLDCFWERHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAIEAKERHQKKLNRTVVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 259          
BLAST of CF834178 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 7.077e-71
Identity = 120/149 (80.54%), Postives = 135/149 (90.60%), Query Frame = -1
Query:  360 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 806
            RVPGVTKTEVGYS G +HNPSYEDVC+GTT HNEVVRVQYDPKECSF++LLD+FW RHDPT LNRQG DVGTQYRSGIY+YT EQE+ A+E++E+QQK+LN++IVTEILPA KFYRAE YHQQYLAKGGR G +QS EKGC DPIRCYG
Sbjct:  110 RVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREAVEKQQKILNKRIVTEILPATKFYRAENYHQQYLAKGGRMGLRQSAEKGCKDPIRCYG 258          
BLAST of CF834178 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.059e-70
Identity = 121/149 (81.21%), Postives = 134/149 (89.93%), Query Frame = -1
Query:  360 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 806
            RVPGVTKTEVGYS G++ NP+YEDVCS TT HNE+VRVQYDPKE SF++LLD+FW RHDPT LNRQGNDVGT+YRSGIYFYT EQEK A+E++E+QQK+LNRKIVTEILPA KFYRAE YHQQYLAKGGR G  QS EKGCNDPIRCYG
Sbjct:  109 RVPGVTKTEVGYSHGFVDNPTYEDVCSETTGHNEIVRVQYDPKEVSFESLLDVFWKRHDPTTLNRQGNDVGTRYRSGIYFYTDEQEKLAREAMEKQQKILNRKIVTEILPATKFYRAENYHQQYLAKGGRMGLSQSAEKGCNDPIRCYG 257          
BLAST of CF834178 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 5.261e-58
Identity = 104/150 (69.33%), Postives = 125/150 (83.33%), Query Frame = -1
Query:  360 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-NRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 806
            RV GV KTEVGYSQG++H+P+Y  VCSGTTNH+EVVRVQ+DP+ C +  LL +FW+RHDPT LNRQG DVGTQYRSGIY+Y  EQ+  AK+S E +QK   ++++VTEILPAK+FYRAEEYHQQYL KGG  G KQS +KGCNDPI+CYG
Sbjct:   42 RVVGVIKTEVGYSQGHVHDPNYRLVCSGTTNHSEVVRVQFDPQVCPYSDLLSVFWSRHDPTTLNRQGGDVGTQYRSGIYYYNEEQDCLAKKSKEAKQKEFKDKRVVTEILPAKRFYRAEEYHQQYLEKGGGNGNKQSAQKGCNDPIKCYG 191          
BLAST of CF834178 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.410e-57
Identity = 102/150 (68.00%), Postives = 121/150 (80.67%), Query Frame = -1
Query:  360 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK-VLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 806
            RV GV KTEVGYSQG +H+P+Y+ +CSGTT H E +R+Q+DP  C +  LL +FW+RHDPT LNRQGNDVG QYRSGIY+Y   Q + A+ESLE +QK  +++KIVTEILPAK+FYRAEEYHQQYL KGG  G KQS  KGCNDPIRCYG
Sbjct:   47 RVGGVVKTEVGYSQGNVHDPNYKLICSGTTEHAEAIRIQFDPNVCPYSNLLSLFWSRHDPTTLNRQGNDVGKQYRSGIYYYNDAQAQLARESLEAKQKEFMDKKIVTEILPAKRFYRAEEYHQQYLEKGGGRGCKQSAAKGCNDPIRCYG 196          
BLAST of CF834178 vs. ExPASy Swiss-Prot
Match: MSRA1_SYNY3 (Peptide methionine sulfoxide reductase msrA 1 OS=Synechocystis sp. (strain PCC 6803) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.119e-37
Identity = 74/131 (56.49%), Postives = 95/131 (72.52%), Query Frame = -1
Query:  426 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 806
            ++PGV  T VGY+ GY  NP+Y++VC+G T HNEVV V +DP++ S+D LL +FW  H+PT   RQGNDVGTQYRSGIY Y+  Q++AA  S +  Q+ L +    +I TEILPA  FY AE+YHQQYLAK
Sbjct:   67 QIPGVYSTAVGYAAGYTPNPTYQEVCTGMTGHNEVVLVAFDPQQVSYDQLLKVFWESHNPTQGMRQGNDVGTQYRSGIYTYSEAQQQAALASKQAYQQALQQAGYGEITTEILPAPDFYYAEDYHQQYLAK 197          
BLAST of CF834178 vs. ExPASy Swiss-Prot
Match: MSRA_CYAP8 (Peptide methionine sulfoxide reductase msrA OS=Cyanothece sp. (strain PCC 8801) GN=msrA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.392e-36
Identity = 75/128 (58.59%), Postives = 92/128 (71.88%), Query Frame = -1
Query:  426 GVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 797
            GV  T VGY+ G   NP+Y++VC+G T HNEVV V +DPK  S++ LL +FW  H+PT   RQGNDVGTQYRSGIY Y+P+ +KAA+ S E  QK LN+     I TEIL A +FY AE+YHQQYLAK
Sbjct:   69 GVYTTAVGYAAGITPNPTYQEVCTGLTGHNEVVLVVFDPKIISYEELLKVFWESHNPTQGMRQGNDVGTQYRSGIYVYSPQHKKAAETSKEVYQKALNQAGYGDITTEILDAPEFYYAEDYHQQYLAK 196          
BLAST of CF834178 vs. ExPASy Swiss-Prot
Match: MSRA_SACD2 (Peptide methionine sulfoxide reductase msrA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.647e-35
Identity = 74/131 (56.49%), Postives = 93/131 (70.99%), Query Frame = -1
Query:  426 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 806
            ++PGV  T VGYS G+  NP+YE+VCSG+T HNEVV V Y+P + SF  LL +FW  H+PT   RQGND+GTQYRSG+Y Y+ EQ + A+ S +  Q +L  K    I TEI+ AK+FY AE YHQQYLAK
Sbjct:   67 QLPGVYVTAVGYSAGFTPNPTYEEVCSGSTGHNEVVLVVYNPSQVSFKKLLAVFWESHNPTQGMRQGNDLGTQYRSGVYVYSDEQAEQAEHSKQVVQAMLTEKGYGEITTEIIKAKEFYFAEAYHQQYLAK 197          
BLAST of CF834178 vs. ExPASy Swiss-Prot
Match: MSRA_GEOSL (Peptide methionine sulfoxide reductase msrA OS=Geobacter sulfurreducens GN=msrA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.647e-35
Identity = 73/131 (55.73%), Postives = 93/131 (70.99%), Query Frame = -1
Query:  420 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN--RKIVTEILPAKKFYRAEEYHQQYLAKGG 806
            RVPGV  T  GY  G+  +P+YE+VCS TT H EVV V +DP   ++D LL +FW  HDPT LNRQG D+GT YRS I++++P+QE+AA+ SLE +Q+     R IVTEI+PA  F+ AEEYHQ YL K G
Sbjct:   26 RVPGVVSTLAGYMGGWKEHPTYEEVCSKTTGHAEVVEVTFDPAAVTYDHLLRVFWDCHDPTQLNRQGPDIGTNYRSVIFYHSPDQERAARASLEHEQRSGRHARPIVTEIVPAATFWWAEEYHQHYLEKRG 156          
BLAST of CF834178 vs. ExPASy Swiss-Prot
Match: MSRA_DICDI (Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum GN=msrA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.151e-35
Identity = 71/125 (56.80%), Postives = 89/125 (71.20%), Query Frame = -1
Query:  432 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYL 806
            RV GVTKT VGY+ G + NP+Y  VCSG T   E V ++YDP++ +++ LL +FW++HDPT LNRQGNDVGTQYRSGIY++  EQ+  A  S E++Q      I TEILPA  FY AE  HQQYL
Sbjct:   20 RVAGVTKTRVGYTNGTVENPTYRQVCSGKTGCAEAVELEYDPEKVTYNQLLGLFWSKHDPTTLNRQGNDVGTQYRSGIYYHNEEQKNEAIASKEKEQLKYKDPISTEILPAGVFYPAETEHQQYL 144          
The following BLAST results are available for this feature:
BLAST of CF834178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_LACSA1.628e-7586.58Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_ARATH7.077e-7180.54Peptide methionine sulfoxide reductase OS=Arabidop... [more]
MSRA_BRANA2.059e-7081.21Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_FRAAN5.261e-5869.33Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRA_SOLLC3.410e-5768.00Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA1_SYNY35.119e-3756.49Peptide methionine sulfoxide reductase msrA 1 OS=S... [more]
MSRA_CYAP87.392e-3658.59Peptide methionine sulfoxide reductase msrA OS=Cya... [more]
MSRA_SACD21.647e-3556.49Peptide methionine sulfoxide reductase msrA OS=Sac... [more]
MSRA_GEOSL1.647e-3555.73Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA_DICDI2.151e-3556.80Peptide methionine sulfoxide reductase OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834178 ID=CF834178; Name=CF834178; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTTTTTTTTTAGCAAAACGAGATAAAGAGTGGGATCCCTTACC
GAGAATATTACAATTAGACGCTTCCTTCGAATTACAAGACTACATTAGCT
TGTTCTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAG
AAACTTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATT
ACAGATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAG
TTCAGACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTT
ATAATGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGG
TACTATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAG
ATTGTTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTAT
TCCTCAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTT
CCTGTTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCT
CTTGCTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACA
TCATTACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACAT
ATCAAGCAAAGTATCGAAACTACACTCCTTAGGATCATACTGAACCCTAA
CAACTTCATTATGATTGGTAGTCCCACTACACACGTCCTCGTAGCTAGGG
TTATGCAAGTAGCCTTGGCTGTACCCAACTTCGGTCTTGGTGACACCTGG
CACTCTCCC
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