CF834179

Overview
NameCF834179
Unique NameCF834179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2698 contig Csv1_Contig2698:565..1211. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 8.442e-76
Identity = 129/150 (86.00%), Postives = 140/150 (93.33%), Query Frame = 2
Query:    2 RRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 451
            +RVPGV+KTEVGY+QG+LHNP+Y D+CSGTTNH+EVVRVQYDPK CSFD+LLD FW RHDPT LNRQGNDVGTQYRSGIYFYTPEQEKAA E+ ER QK LNR +VTEILPAKKFYRAEEYHQQYLAKGGRFGF+QSTEKGCNDPIRCYG
Sbjct:  110 QRVPGVSKTEVGYTQGFLHNPTYNDICSGTTNHSEVVRVQYDPKACSFDSLLDCFWERHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAIEAKERHQKKLNRTVVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 259          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 3.670e-71
Identity = 120/150 (80.00%), Postives = 136/150 (90.67%), Query Frame = 2
Query:    2 RRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 451
            +RVPGVTKTEVGYS G +HNPSYEDVC+GTT HNEVVRVQYDPKECSF++LLD+FW RHDPT LNRQG DVGTQYRSGIY+YT EQE+ A+E++E+QQK+LN++IVTEILPA KFYRAE YHQQYLAKGGR G +QS EKGC DPIRCYG
Sbjct:  109 QRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREAVEKQQKILNKRIVTEILPATKFYRAENYHQQYLAKGGRMGLRQSAEKGCKDPIRCYG 258          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.068e-70
Identity = 121/150 (80.67%), Postives = 135/150 (90.00%), Query Frame = 2
Query:    2 RRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 451
            +RVPGVTKTEVGYS G++ NP+YEDVCS TT HNE+VRVQYDPKE SF++LLD+FW RHDPT LNRQGNDVGT+YRSGIYFYT EQEK A+E++E+QQK+LNRKIVTEILPA KFYRAE YHQQYLAKGGR G  QS EKGCNDPIRCYG
Sbjct:  108 QRVPGVTKTEVGYSHGFVDNPTYEDVCSETTGHNEIVRVQYDPKEVSFESLLDVFWKRHDPTTLNRQGNDVGTRYRSGIYFYTDEQEKLAREAMEKQQKILNRKIVTEILPATKFYRAENYHQQYLAKGGRMGLSQSAEKGCNDPIRCYG 257          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.728e-58
Identity = 104/151 (68.87%), Postives = 126/151 (83.44%), Query Frame = 2
Query:    2 RRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-NRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 451
            +RV GV KTEVGYSQG++H+P+Y  VCSGTTNH+EVVRVQ+DP+ C +  LL +FW+RHDPT LNRQG DVGTQYRSGIY+Y  EQ+  AK+S E +QK   ++++VTEILPAK+FYRAEEYHQQYL KGG  G KQS +KGCNDPI+CYG
Sbjct:   41 QRVVGVIKTEVGYSQGHVHDPNYRLVCSGTTNHSEVVRVQFDPQVCPYSDLLSVFWSRHDPTTLNRQGGDVGTQYRSGIYYYNEEQDCLAKKSKEAKQKEFKDKRVVTEILPAKRFYRAEEYHQQYLEKGGGNGNKQSAQKGCNDPIKCYG 191          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.768e-57
Identity = 102/151 (67.55%), Postives = 122/151 (80.79%), Query Frame = 2
Query:    2 RRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK-VLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 451
            +RV GV KTEVGYSQG +H+P+Y+ +CSGTT H E +R+Q+DP  C +  LL +FW+RHDPT LNRQGNDVG QYRSGIY+Y   Q + A+ESLE +QK  +++KIVTEILPAK+FYRAEEYHQQYL KGG  G KQS  KGCNDPIRCYG
Sbjct:   46 QRVGGVVKTEVGYSQGNVHDPNYKLICSGTTEHAEAIRIQFDPNVCPYSNLLSLFWSRHDPTTLNRQGNDVGKQYRSGIYYYNDAQAQLARESLEAKQKEFMDKKIVTEILPAKRFYRAEEYHQQYLEKGGGRGCKQSAAKGCNDPIRCYG 196          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA1_SYNY3 (Peptide methionine sulfoxide reductase msrA 1 OS=Synechocystis sp. (strain PCC 6803) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.467e-37
Identity = 74/131 (56.49%), Postives = 95/131 (72.52%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T VGY+ GY  NP+Y++VC+G T HNEVV V +DP++ S+D LL +FW  H+PT   RQGNDVGTQYRSGIY Y+  Q++AA  S +  Q+ L +    +I TEILPA  FY AE+YHQQYLAK
Sbjct:   67 QIPGVYSTAVGYAAGYTPNPTYQEVCTGMTGHNEVVLVAFDPQQVSYDQLLKVFWESHNPTQGMRQGNDVGTQYRSGIYTYSEAQQQAALASKQAYQQALQQAGYGEITTEILPAPDFYYAEDYHQQYLAK 197          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_GEOSL (Peptide methionine sulfoxide reductase msrA OS=Geobacter sulfurreducens GN=msrA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.935e-36
Identity = 74/132 (56.06%), Postives = 94/132 (71.21%), Query Frame = 2
Query:    2 RRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN--RKIVTEILPAKKFYRAEEYHQQYLAKGG 391
            RRVPGV  T  GY  G+  +P+YE+VCS TT H EVV V +DP   ++D LL +FW  HDPT LNRQG D+GT YRS I++++P+QE+AA+ SLE +Q+     R IVTEI+PA  F+ AEEYHQ YL K G
Sbjct:   25 RRVPGVVSTLAGYMGGWKEHPTYEEVCSKTTGHAEVVEVTFDPAAVTYDHLLRVFWDCHDPTQLNRQGPDIGTNYRSVIFYHSPDQERAARASLEHEQRSGRHARPIVTEIVPAATFWWAEEYHQHYLEKRG 156          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_CYAP8 (Peptide methionine sulfoxide reductase msrA OS=Cyanothece sp. (strain PCC 8801) GN=msrA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.007e-36
Identity = 75/128 (58.59%), Postives = 92/128 (71.88%), Query Frame = 2
Query:   14 GVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 385
            GV  T VGY+ G   NP+Y++VC+G T HNEVV V +DPK  S++ LL +FW  H+PT   RQGNDVGTQYRSGIY Y+P+ +KAA+ S E  QK LN+     I TEIL A +FY AE+YHQQYLAK
Sbjct:   69 GVYTTAVGYAAGITPNPTYQEVCTGLTGHNEVVLVVFDPKIISYEELLKVFWESHNPTQGMRQGNDVGTQYRSGIYVYSPQHKKAAETSKEVYQKALNQAGYGDITTEILDAPEFYYAEDYHQQYLAK 196          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_METMJ (Peptide methionine sulfoxide reductase msrA OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=msrA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.539e-36
Identity = 76/133 (57.14%), Postives = 93/133 (69.92%), Query Frame = 2
Query:    2 RRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQE---KAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGG 391
            RRVPGV +T VG+  G + NP+Y +VC+G T H EVV+V YDP   S+  LLD FW  HDPT  NRQG D+GTQYRS I+ +TPEQE   +A+KE +++  K   R IVT I PA  F+RAEEYHQQY AK G
Sbjct:   25 RRVPGVVETAVGFMGGTVENPTYPEVCTGRTGHAEVVQVTYDPGTVSYRALLDTFWDAHDPTTPNRQGPDIGTQYRSVIFVHTPEQEAEARASKEEMDQSGK-FRRPIVTAIEPAGTFWRAEEYHQQYFAKRG 156          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_SACD2 (Peptide methionine sulfoxide reductase msrA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.115e-35
Identity = 74/131 (56.49%), Postives = 93/131 (70.99%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T VGYS G+  NP+YE+VCSG+T HNEVV V Y+P + SF  LL +FW  H+PT   RQGND+GTQYRSG+Y Y+ EQ + A+ S +  Q +L  K    I TEI+ AK+FY AE YHQQYLAK
Sbjct:   67 QLPGVYVTAVGYSAGFTPNPTYEEVCSGSTGHNEVVLVVYNPSQVSFKKLLAVFWESHNPTQGMRQGNDLGTQYRSGVYVYSDEQAEQAEHSKQVVQAMLTEKGYGEITTEIIKAKEFYFAEAYHQQYLAK 197          
The following BLAST results are available for this feature:
BLAST of CF834179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_LACSA8.442e-7686.00Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_ARATH3.670e-7180.00Peptide methionine sulfoxide reductase OS=Arabidop... [more]
MSRA_BRANA1.068e-7080.67Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_FRAAN2.728e-5868.87Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRA_SOLLC1.768e-5767.55Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA1_SYNY33.467e-3756.49Peptide methionine sulfoxide reductase msrA 1 OS=S... [more]
MSRA_GEOSL2.935e-3656.06Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA_CYAP85.007e-3658.59Peptide methionine sulfoxide reductase msrA OS=Cya... [more]
MSRA_METMJ6.539e-3657.14Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_SACD21.115e-3556.49Peptide methionine sulfoxide reductase msrA OS=Sac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834179 ID=CF834179; Name=CF834179; organism=Citrus sinensis; type=EST; length=647bp
CCGTAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCT
ACTTGCATAACCCTAGCTACGAGGACGTGTGTAGTGGGACTACCAATCAT
AATGAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATAC
TTTGCTTGATATGTTTTGGGCTCGCCATGATCCTACCATGCTTAATCGGC
AGGGTAATGATGTTGGAACACAGTACAGATCTGGAATTTATTTTTACACT
CCTGAGCAAGAGAAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGT
CTTGAACAGGAAAATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACC
GAGCTGAGGAATACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGA
TTCAAACAATCTACTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGG
CTAAATAGTACCCTGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATCT
TAGCCATTATAACTTGTGTTCTTGCTATGATAAGAATGCCAGATGTATTT
AGTGTCTGAACTTGGGTATGTAACTAGTCATAGTCTCTTAAAACCATCAT
CTATATCTGTAATTTCACTGGTCATGTTTTTTAATGTTTATGTAAAG
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