CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2698 contig Csv1_Contig2698:691..1320. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.613e-52
Identity = 95/108 (87.96%), Postives = 99/108 (91.67%), Query Frame = -2
Query:  306 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 629
            PK CSFD+LLD FW RHDPT LNRQGNDVGTQYRSGIYFYTPEQEKAA E+ ER QK LNR +VTEILPAKKFYRAEEYHQQYLAKGGRFGF+QSTEKGCNDPIRCYG
Sbjct:  152 PKACSFDSLLDCFWERHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAIEAKERHQKKLNRTVVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 259          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.857e-49
Identity = 88/108 (81.48%), Postives = 97/108 (89.81%), Query Frame = -2
Query:  306 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 629
            PKE SF++LLD+FW RHDPT LNRQGNDVGT+YRSGIYFYT EQEK A+E++E+QQK+LNRKIVTEILPA KFYRAE YHQQYLAKGGR G  QS EKGCNDPIRCYG
Sbjct:  150 PKEVSFESLLDVFWKRHDPTTLNRQGNDVGTRYRSGIYFYTDEQEKLAREAMEKQQKILNRKIVTEILPATKFYRAENYHQQYLAKGGRMGLSQSAEKGCNDPIRCYG 257          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 7.013e-48
Identity = 84/108 (77.78%), Postives = 97/108 (89.81%), Query Frame = -2
Query:  306 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 629
            PKECSF++LLD+FW RHDPT LNRQG DVGTQYRSGIY+YT EQE+ A+E++E+QQK+LN++IVTEILPA KFYRAE YHQQYLAKGGR G +QS EKGC DPIRCYG
Sbjct:  151 PKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREAVEKQQKILNKRIVTEILPATKFYRAENYHQQYLAKGGRMGLRQSAEKGCKDPIRCYG 258          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.181e-40
Identity = 76/109 (69.72%), Postives = 87/109 (79.82%), Query Frame = -2
Query:  306 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK-VLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 629
            P  C +  LL +FW+RHDPT LNRQGNDVG QYRSGIY+Y   Q + A+ESLE +QK  +++KIVTEILPAK+FYRAEEYHQQYL KGG  G KQS  KGCNDPIRCYG
Sbjct:   88 PNVCPYSNLLSLFWSRHDPTTLNRQGNDVGKQYRSGIYYYNDAQAQLARESLEAKQKEFMDKKIVTEILPAKRFYRAEEYHQQYLEKGGGRGCKQSAAKGCNDPIRCYG 196          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.731e-38
Identity = 73/109 (66.97%), Postives = 88/109 (80.73%), Query Frame = -2
Query:  306 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-NRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 629
            P+ C +  LL +FW+RHDPT LNRQG DVGTQYRSGIY+Y  EQ+  AK+S E +QK   ++++VTEILPAK+FYRAEEYHQQYL KGG  G KQS +KGCNDPI+CYG
Sbjct:   83 PQVCPYSDLLSVFWSRHDPTTLNRQGGDVGTQYRSGIYYYNEEQDCLAKKSKEAKQKEFKDKRVVTEILPAKRFYRAEEYHQQYLEKGGGNGNKQSAQKGCNDPIKCYG 191          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CYAP8 (Peptide methionine sulfoxide reductase msrA OS=Cyanothece sp. (strain PCC 8801) GN=msrA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.020e-22
Identity = 54/90 (60.00%), Postives = 65/90 (72.22%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 629
            PK  S++ LL +FW  H+PT   RQGNDVGTQYRSGIY Y+P+ +KAA+ S E  QK LN+     I TEIL A +FY AE+YHQQYLAK
Sbjct:  107 PKIISYEELLKVFWESHNPTQGMRQGNDVGTQYRSGIYVYSPQHKKAAETSKEVYQKALNQAGYGDITTEILDAPEFYYAEDYHQQYLAK 196          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_GEOMG (Peptide methionine sulfoxide reductase msrA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.610e-22
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = -2
Query:  366 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQ--QKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGG 629
            P   S+D LL +FW  HDPT LNRQG D+GT YRS I+F+TPEQE+AA+ S+E++      +R IVTEI  A  F+ AEEYHQQYL K G
Sbjct:   67 PARVSYDELLRIFWTIHDPTQLNRQGPDIGTNYRSVIFFHTPEQEQAARLSMEKEGGSGRYSRPIVTEIASASAFWWAEEYHQQYLEKRG 156          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_GEOSL (Peptide methionine sulfoxide reductase msrA OS=Geobacter sulfurreducens GN=msrA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = -2
Query:  366 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN--RKIVTEILPAKKFYRAEEYHQQYLAKGG 629
            P   ++D LL +FW  HDPT LNRQG D+GT YRS I++++P+QE+AA+ SLE +Q+     R IVTEI+PA  F+ AEEYHQ YL K G
Sbjct:   67 PAAVTYDHLLRVFWDCHDPTQLNRQGPDIGTNYRSVIFYHSPDQERAARASLEHEQRSGRHARPIVTEIVPAATFWWAEEYHQHYLEKRG 156          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA1_SYNY3 (Peptide methionine sulfoxide reductase msrA 1 OS=Synechocystis sp. (strain PCC 6803) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 629
            P++ S+D LL +FW  H+PT   RQGNDVGTQYRSGIY Y+  Q++AA  S +  Q+ L +    +I TEILPA  FY AE+YHQQYLAK
Sbjct:  108 PQQVSYDQLLKVFWESHNPTQGMRQGNDVGTQYRSGIYTYSEAQQQAALASKQAYQQALQQAGYGEITTEILPAPDFYYAEDYHQQYLAK 197          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_DICDI (Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum GN=msrA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = -2
Query:  378 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYL 629
            P++ +++ LL +FW++HDPT LNRQGNDVGTQYRSGIY++  EQ+  A  S E++Q      I TEILPA  FY AE  HQQYL
Sbjct:   61 PEKVTYNQLLGLFWSKHDPTTLNRQGNDVGTQYRSGIYYHNEEQKNEAIASKEKEQLKYKDPISTEILPAGVFYPAETEHQQYL 144          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_LACSA1.613e-5287.96Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_BRANA4.857e-4981.48Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_ARATH7.013e-4877.78Peptide methionine sulfoxide reductase OS=Arabidop... [more]
MSRA_SOLLC9.181e-4069.72Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA_FRAAN1.731e-3866.97Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRA_CYAP81.020e-2260.00Peptide methionine sulfoxide reductase msrA OS=Cya... [more]
MSRA_GEOMG6.610e-2257.78Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA_GEOSL1.923e-2155.56Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA1_SYNY31.923e-2156.67Peptide methionine sulfoxide reductase msrA 1 OS=S... [more]
MSRA_DICDI3.280e-2157.14Peptide methionine sulfoxide reductase OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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