CF834188

Overview
NameCF834188
Unique NameCF834188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6751 contig Csv1_Contig6751:512..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB3_BRANA (Acetolactate synthase 3, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.394e-72
Identity = 129/146 (88.36%), Postives = 139/146 (95.21%), Query Frame = -1
Query:  190 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQY 627
            VANPDAI+VDIDGDGSFIMNVQELATI+VE LP+KILLLNNQHLGMVMQWEDRFYKANRAHTYLGDP+RE+EIFPNML+FA ACGIP A+VT+K +LR AIQTMLDTPGPYLLDVI PHQEHVLPMIPSGG FKDVITEGDGRT+Y
Sbjct:  507 VANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPARENEIFPNMLQFAGACGIPAARVTKKEELREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVITEGDGRTKY 652          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB1_BRANA (Acetolactate synthase 1, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.394e-72
Identity = 129/146 (88.36%), Postives = 139/146 (95.21%), Query Frame = -1
Query:  190 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQY 627
            VANPDAI+VDIDGDGSFIMNVQELATI+VE LP+KILLLNNQHLGMVMQWEDRFYKANRAHTYLGDP+RE+EIFPNML+FA ACGIP A+VT+K +LR AIQTMLDTPGPYLLDVI PHQEHVLPMIPSGG FKDVITEGDGRT+Y
Sbjct:  510 VANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPARENEIFPNMLQFAGACGIPAARVTKKEELREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVITEGDGRTKY 655          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_ARATH (Acetolactate synthase, chloroplastic OS=Arabidopsis thaliana GN=CSR 1.2 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.006e-70
Identity = 126/146 (86.30%), Postives = 136/146 (93.15%), Query Frame = -1
Query:  190 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQY 627
            VANPDAI+VDIDGDGSFIMNVQELATI+VE LP+K+LLLNNQHLGMVMQWEDRFYKANRAHT+LGDP++E EIFPNML FA ACGIP A+VT+KADLR AIQTMLDTPGPYLLDVI PHQEHVLPMIPSGG F DVITEGDGR +Y
Sbjct:  525 VANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGRIKY 670          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB2_TOBAC (Acetolactate synthase 2, chloroplastic OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 3.822e-70
Identity = 124/146 (84.93%), Postives = 135/146 (92.47%), Query Frame = -1
Query:  190 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQY 627
            V  PD ++VDIDGDGSFIMNVQELATIKVE LP+KI+LLNNQHLGMV+QWEDRFYKANRAHTYLG+PS E+EIFPNMLKFAEACG+P A+VT + DLRAAIQ MLDTPGPYLLDVI PHQEHVLPMIPSGGAFKDVITEGDGR+ Y
Sbjct:  519 VGRPDEVVVDIDGDGSFIMNVQELATIKVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNEAEIFPNMLKFAEACGVPAARVTHRDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRSSY 664          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB1_TOBAC (Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 3.822e-70
Identity = 124/146 (84.93%), Postives = 135/146 (92.47%), Query Frame = -1
Query:  190 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQY 627
            V  PD ++VDIDGDGSFIMNVQELATIKVE LP+KI+LLNNQHLGMV+QWEDRFYKANRAHTYLG+PS E+EIFPNMLKFAEACG+P A+VT + DLRAAIQ MLDTPGPYLLDVI PHQEHVLPMIPSGGAFKDVITEGDGR+ Y
Sbjct:  522 VGRPDEVVVDIDGDGSFIMNVQELATIKVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNEAEIFPNMLKFAEACGVPAARVTHRDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRSSY 667          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB1_ORYSJ (Acetolactate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS1 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.964e-59
Identity = 102/146 (69.86%), Postives = 127/146 (86.99%), Query Frame = -1
Query:  190 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQY 627
            VANP   +VDIDGDGSF+MN+QELA I++E LP+K+++LNNQHLGMV+QWEDRFYKANRAHTYLG+P  ESEI+P+ +  A+   IP  +VT+K+++RAAI+ ML+TPGPYLLD+I PHQEHVLPMIPSGGAFKD+I +GDGRT Y
Sbjct:  499 VANPGVTVVDIDGDGSFLMNIQELALIRIENLPVKVMVLNNQHLGMVVQWEDRFYKANRAHTYLGNPECESEIYPDFVTIAKGFNIPAVRVTKKSEVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY 644          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB1_MAIZE (Acetolactate synthase 1, chloroplastic OS=Zea mays GN=ALS1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.177e-59
Identity = 103/146 (70.55%), Postives = 125/146 (85.62%), Query Frame = -1
Query:  190 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQY 627
            VANP   +VDIDGDGSF+MNVQELA I++E LP+K+ +LNNQHLGMV+QWEDRFYKANRAHTYLG+P  ESEI+P+ +  A+   IP  +VT+K ++RAAI+ ML+TPGPYLLD+I PHQEHVLPMIPSGGAFKD+I +GDGRT Y
Sbjct:  493 VANPGVTVVDIDGDGSFLMNVQELAMIRIENLPVKVFVLNNQHLGMVVQWEDRFYKANRAHTYLGNPENESEIYPDFVTIAKGFNIPAVRVTKKNEVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY 638          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB2_MAIZE (Acetolactate synthase 2, chloroplastic OS=Zea mays GN=ALS2 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.275e-57
Identity = 99/146 (67.81%), Postives = 124/146 (84.93%), Query Frame = -1
Query:  190 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQY 627
            VANP   +VDIDGDGSF+MN+QELA I++E LP+K+ +LNNQHLGMV+QWEDRFYKANRAHT+LG+P  ESEI+P+ +  A+   IP  +VT+K+++ AAI+ ML+ PGPYLLD+I PHQEHVLPMIPSGGAFKD+I +GDGRT Y
Sbjct:  493 VANPGVTVVDIDGDGSFLMNIQELAMIRIENLPVKVFVLNNQHLGMVVQWEDRFYKANRAHTFLGNPENESEIYPDFVAIAKGFNIPAVRVTKKSEVHAAIKKMLEAPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY 638          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB2_BRANA (Acetolactate synthase 2, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.275e-57
Identity = 99/137 (72.26%), Postives = 121/137 (88.32%), Query Frame = -1
Query:  217 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVI 627
            +ANP A++VDIDGDGSFIMN+QELATI+VE LP+K+LL+NNQHLGMV+QWED FY ANRA ++LGDP+    +FP+ML FA +CGIP A+VTR+ DLR AIQTMLDTPGP+LLDV+ PHQ+HVLP+IPSGG FKD+I
Sbjct:  500 IANPGAVVVDIDGDGSFIMNIQELATIRVENLPVKVLLINNQHLGMVLQWEDHFYAANRADSFLGDPANPEAVFPDMLLFAASCGIPAARVTRREDLREAIQTMLDTPGPFLLDVVCPHQDHVLPLIPSGGTFKDII 636          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB2_ORYSJ (Probable acetolactate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS2 PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 5.923e-55
Identity = 96/148 (64.86%), Postives = 122/148 (82.43%), Query Frame = -1
Query:  190 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE--SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQY 627
            VANP A +VDIDGDGS +MN+QELA ++VE LP+K+++LNNQHLGMV+QWEDRFY ANRAHTYLG+P+     E++P+ +  A   GIP A+VTRK ++RAA++ M+  PGPYLLDV+ PHQEHVLPMIPS GAFKD+I +GDGR+ Y
Sbjct:  516 VANPGATVVDIDGDGSLLMNIQELAMVRVEDLPVKVMVLNNQHLGMVVQWEDRFYDANRAHTYLGNPAANGGGEVYPDFVTIAGGFGIPAARVTRKGEVRAAVEEMMAAPGPYLLDVVVPHQEHVLPMIPSNGAFKDIIVDGDGRSSY 663          
The following BLAST results are available for this feature:
BLAST of CF834188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ILVB3_BRANA2.394e-7288.36Acetolactate synthase 3, chloroplastic OS=Brassica... [more]
ILVB1_BRANA2.394e-7288.36Acetolactate synthase 1, chloroplastic OS=Brassica... [more]
ILVB_ARATH1.006e-7086.30Acetolactate synthase, chloroplastic OS=Arabidopsi... [more]
ILVB2_TOBAC3.822e-7084.93Acetolactate synthase 2, chloroplastic OS=Nicotian... [more]
ILVB1_TOBAC3.822e-7084.93Acetolactate synthase 1, chloroplastic OS=Nicotian... [more]
ILVB1_ORYSJ3.964e-5969.86Acetolactate synthase 1, chloroplastic OS=Oryza sa... [more]
ILVB1_MAIZE5.177e-5970.55Acetolactate synthase 1, chloroplastic OS=Zea mays... [more]
ILVB2_MAIZE1.275e-5767.81Acetolactate synthase 2, chloroplastic OS=Zea mays... [more]
ILVB2_BRANA1.275e-5772.26Acetolactate synthase 2, chloroplastic OS=Brassica... [more]
ILVB2_ORYSJ5.923e-5564.86Probable acetolactate synthase 2, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834188 ID=CF834188; Name=CF834188; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTCCTTTTTAAATAACATTGTAACTCATAGAGTTTGTTTGTT
AAACAAACACTAGTTCCATTAAAACTGACACCTGAACTAAAAACACTGCC
ACACACTCATAGGTAAGTTAAGCCTGCAACTCAAAAGGAACATAAATACA
TAGCCAAGAAGGCATCTATGCTGCTTCAGCTTGTCGTTAATACTGTGTTC
TTCCATCACCTTCAGTTATCACATCTTTAAAAGCTCCACCACTGGGGATC
ATAGGCAGGACATGCTCTTGATGAGGAAAGATGACGTCCAGAAGGTATGG
TCCAGGAGTGTCCAACATAGTCTGAATTGCGGCTCTCAGATCTGCCTTCC
TTGTTACTTGTGCTCCAGGTATTCCACAGGCTTCTGCAAACTTCAACATA
TTCGGAAATATTTCAGACTCTCTTGATGGATCTCCCAAATACGTGTGAGC
CCTATTTGCCTTGTAAAACCGATCCTCCCATTGCATCACCATGCCCAAGT
GCTGATTATTCAACAGCAATATCTTGATGGGGAGTTTCTCTACCTTAATA
GTCGCCAACTCCTGGACGTTCATGATGAAACTCCCATCACCATCAATATC
TACAATGATGGCATCAGGATTTGCAAC
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