CF834265

Overview
NameCF834265
Unique NameCF834265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834265_ssr261 microsatellite CF834265_ssr261:261..272. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12933 contig Csv1_Contig12933:77..354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834265 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.085e-21
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    6 NSPRNCCTGTYGNPQSCQPTAYSRIFKAACPTSYCYAYDDPTTIGTCTCSNYLLNFC 176
            NSP+ CCTG +GNPQSC+PTAYS+IFK ACP +Y YAYDDPT+I TC+ +NY++ FC
Sbjct:  182 NSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATCSKANYIVTFC 238          
BLAST of CF834265 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.409e-14
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 3
Query:   15 RNCCTGTYGNPQSCQPTAYSRIFKAACPTSYCYAYDDPTTIGTCTCSNYLLNFC 176
            R CCTG Y +P +C+PT +S +FKA CP +Y YAYDD T++  C    YL+ FC
Sbjct:  195 RYCCTGDYASPSACRPTIFSHLFKAICPRAYSYAYDDATSLNRCHAKRYLITFC 248          
BLAST of CF834265 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.229e-13
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 3
Query:    6 NSPRNCCTGTYGNPQSCQPTAYSRIFKAACPTSYCYAYDDPTTIGTCTCSNYLLNFC 176
            N+ + CC G    P++C PT YSRIFK ACP +Y YAYDD T+  TCT +NY + FC
Sbjct:  182 NTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTGANYEITFC 238          
BLAST of CF834265 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.774e-12
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 3
Query:    6 NSPRNCCTGTYGNPQSCQPTAYSRIFKAACPTSYCYAYDDPTTIGTCTCS-NYLLNFC 176
            N P+ CCTG YG P +C PT +S++FK  CP +Y YAYDD ++  TC    NY + FC
Sbjct:  186 NQPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFC 243          
BLAST of CF834265 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.502e-11
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 3
Query:    6 NSPRNCCTGTYGNPQSCQPTAYSRIFKAACPTSYCYAYDDPTTIGTCT-CSNYLLNFC 176
            N P+ CCTG +   ++C  T YSRIFK  CP +Y YAYDD T+  TC+   +Y++ FC
Sbjct:  185 NQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFC 242          
The following BLAST results are available for this feature:
BLAST of CF834265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TLPH_ARATH6.085e-2168.42Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
TLPH_ORYSJ9.409e-1451.85Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
PR5_ARATH1.229e-1354.39Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLP1_PYRPY1.774e-1250.00Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TLP1_CASSA1.502e-1148.28Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05D15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834265 ID=CF834265; Name=CF834265; organism=Citrus sinensis; type=EST; length=278bp
CTTGCAACTCGCCCAGGAATTGCTGCACTGGGACCTATGGGAATCCTCAA
TCCTGCCAGCCCACTGCTTACTCCAGGATTTTCAAGGCCGCTTGTCCCAC
ATCTTACTGCTATGCTTATGATGATCCCACTACTATTGGTACTTGCACCT
GCAGCAACTACTTGCTCAATTTCTGCCCCCGCCATCGACGTTAGATTTTT
ATACCCATTATCTACGACTACTACTACATACGCTATCAACTTCATTATGA
AATACATCAGATTATTATTATTATATCA
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