CF834266

Overview
NameCF834266
Unique NameCF834266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834266 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.911e-40
Identity = 83/125 (66.40%), Postives = 96/125 (76.80%), Query Frame = -3
Query:  369 ENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVFCGGALQPLPCPL---------APELDDVSESAVNCTN 716
            ENC+LR  IQWI +P+AQ +ATVFVAKFFGRAGLMSFISAVPE+Q P+LFQSLLYEA GRTVNPV+GAVGLLWTGNWNVCQ+AVE V  GG+L+P+P  L         +P  D+ SE      N
Sbjct:   15 ENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEMLN 139          
BLAST of CF834266 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.593e-39
Identity = 79/134 (58.96%), Postives = 96/134 (71.64%), Query Frame = -3
Query:  354 ENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVFCGGALQPL-------------PCPLAPELDDVSESAVNCTNNSPKD 716
            ENC+LR  IQWI T  AQ +ATVFVAKFFGRAGLMSFISAVP++QRP+LFQSLLYEA GRTVNPV+GA+G+LWTGNWN+CQ+AVE V  GG+L+P+             P P + E  ++    +N   N   D
Sbjct:   15 ENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEEASEICTEMLNLQQNDSTD 148          
BLAST of CF834266 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.127e-34
Identity = 68/96 (70.83%), Postives = 83/96 (86.46%), Query Frame = -3
Query:  429 ENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVFCGGALQPL 716
            E C+LR  +QWI + ++Q +ATVFVAKFFGRAGLMSFIS+VPE QRP+LFQSLL+EA GRTVNPV+GAVG+LWT NW+VCQ+AVE V  GG L+P+
Sbjct:   15 ETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPI 110          
BLAST of CF834266 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.360e-30
Identity = 57/101 (56.44%), Postives = 79/101 (78.22%), Query Frame = -3
Query:  414 ENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVFCGGALQPLPCPLA 716
            ENC +R  +QWI + ++QANATVF+AKF+GRAGLM+ ++  P+  RP++F+SLLYEA GR VNP+ G+VGLLW+GNW++CQ+AVE V  G  + P+ C  A
Sbjct:   17 ENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAA 117          
BLAST of CF834266 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.973e-27
Identity = 55/90 (61.11%), Postives = 71/90 (78.89%), Query Frame = -3
Query:  447 ENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVFCG 716
            E+C +R  + WI +P+AQANATVF+AKF+GRAGLM+ I+A P   RP +F+SLL+EA GR VNP+ G+VGLLW+GNW +CQ AVE V  G
Sbjct:   17 EDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106          
BLAST of CF834266 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.294e-26
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = -3
Query:  414 ENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVFCGGALQPLPCPLA 716
            ++C +R  +QWI +  +QANAT+F+AKF+GRAGL++ I + P+  RP++F+SLLYEA GR VNPV G+VGL+W+GNW  CQ+AV+ V  G  +   P P A
Sbjct:   17 QDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSA 117          
The following BLAST results are available for this feature:
BLAST of CF834266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD38_ARATH8.911e-4066.40LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD37_ARATH2.593e-3958.96LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD39_ARATH1.127e-3470.83LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD40_ARATH8.360e-3056.44LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD41_ARATH2.973e-2761.11LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD42_ARATH4.294e-2652.48LOB domain-containing protein 42 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05D16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834266 ID=CF834266; Name=CF834266; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTGAGGAAAATTTTAATTAAATATCCCTTAAGGCA
AAATTAAGAAGAGAAGATTATACATTAATTCCTCTATAATTGTCCTAAAA
TTATTTAAGACTAAAAAAAAAAGAGAGAGGTTATTAATACTCGTCTGTTG
TTTCAAAGGAAGAGTCTCAAAAGCTTCTTTTCACCTGCGACCTCAGAGCA
ACAATTATCAGACCCGGTTCCCGACGTCGGCGTTTCGGACTCCTCCGACG
GCGTCTCCGCCCTAAGCTTCTCCGGCAAACAAGGCTTCAGACCCAGATGA
AGATCATCGTGAAAATCAGAAACGGCCTTCCTCTTCGATGGCGGAGTGAT
GACGTCCTTTGGACTATTGTTGGTACAGTTCACGGCAGATTCTGACACGT
CATCAAGTTCCGGCGCCAGTGGGCAAGGCAGCGGCTGCAACGCGCCGCCG
CAGAAAACTCTCTCAACCGCCGACTGGCACACGTTCCAGTTTCCTGTCCA
CAGAAGCCCCACGGCGCCGCTCACTGGGTTCACTGTTCTTCCCACCGCTT
CATATAACAGCGACTGAAACAATGAGGGACGTTGGGTTTCGGGGACGGCG
GAGATGAAGGACATGAGGCCGGCGCGGCCGAAGAACTTGGCAACAAAAAC
GGTGGCGTTTGCTTGAGCTTGTGGGGTGCCGATCCATTGAATGCTTTGAC
GAAGCATGCAGTTTTCAC
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