CF834267

Overview
NameCF834267
Unique NameCF834267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834267 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.271e-49
Identity = 98/139 (70.50%), Postives = 111/139 (79.86%), Query Frame = 2
Query:  101 MSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPL---------APELDDVSESAVNCTN 490
            MSCNGCRVLRKGCSENC+LR  IQWI +P+AQ +ATVFVAKFFGRAGLMSFISAVPE+Q P+LFQSLLYEA GRTVNPV+GAVGLLWTGNWNVCQ+AVE VL GG+L+P+P  L         +P  D+ SE      N
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEMLN 139          
BLAST of CF834267 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.697e-49
Identity = 94/148 (63.51%), Postives = 111/148 (75.00%), Query Frame = 2
Query:  101 MSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPL-------------PCPLAPELDDVSESAVNCTNNSPKD 505
            MSCNGCRVLRKGCSENC+LR  IQWI T  AQ +ATVFVAKFFGRAGLMSFISAVP++QRP+LFQSLLYEA GRTVNPV+GA+G+LWTGNWN+CQ+AVE VL GG+L+P+             P P + E  ++    +N   N   D
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEEASEICTEMLNLQQNDSTD 148          
BLAST of CF834267 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.607e-44
Identity = 83/110 (75.45%), Postives = 98/110 (89.09%), Query Frame = 2
Query:  101 MSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPL 430
            MSCNGCRVLRKGCSE C+LR  +QWI + ++Q +ATVFVAKFFGRAGLMSFIS+VPE QRP+LFQSLL+EA GRTVNPV+GAVG+LWT NW+VCQ+AVE VL GG L+P+
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPI 110          
BLAST of CF834267 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.557e-39
Identity = 71/117 (60.68%), Postives = 95/117 (81.20%), Query Frame = 2
Query:   95 INMSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 445
            + MSCNGCRVLRKGCSENC +R  +QWI + ++QANATVF+AKF+GRAGLM+ ++  P+  RP++F+SLLYEA GR VNP+ G+VGLLW+GNW++CQ+AVE V+ G  + P+ C  A
Sbjct:    1 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAA 117          
BLAST of CF834267 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.537e-37
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 2
Query:   95 INMSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCG 412
            + MSCNGCRVLRKGCSE+C +R  + WI +P+AQANATVF+AKF+GRAGLM+ I+A P   RP +F+SLL+EA GR VNP+ G+VGLLW+GNW +CQ AVE V+ G
Sbjct:    1 MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106          
BLAST of CF834267 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.038e-35
Identity = 66/117 (56.41%), Postives = 91/117 (77.78%), Query Frame = 2
Query:   95 INMSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 445
            + +SCNGCRVLRKGC+++C +R  +QWI +  +QANAT+F+AKF+GRAGL++ I + P+  RP++F+SLLYEA GR VNPV G+VGL+W+GNW  CQ+AV+ VL G  +   P P A
Sbjct:    1 MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSA 117          
The following BLAST results are available for this feature:
BLAST of CF834267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD38_ARATH1.271e-4970.50LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD37_ARATH3.697e-4963.51LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD39_ARATH1.607e-4475.45LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD40_ARATH1.557e-3960.68LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD41_ARATH5.537e-3765.09LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD42_ARATH3.038e-3556.41LOB domain-containing protein 42 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05D16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834267 ID=CF834267; Name=CF834267; organism=Citrus sinensis; type=EST; length=725bp
CCAATCCAACCTTTATGCTTTCTTTATAATTATTTATTTTATTTAATTTT
TATTTTTGCTTCTGTTTTGTATGACGTGTGCTGGGCGAAAAAAAATCAAC
ATGAGTTGCAATGGGTGTAGAGTTCTGAGAAAAGGTTGCAGTGAAAACTG
CATGCTTCGTCAAAGCATTCAATGGATCGGCACCCCACAAGCTCAAGCAA
ACGCCACCGTTTTTGTTGCCAAGTTCTTCGGCCGCGCCGGCCTCATGTCC
TTCATCTCCGCCGTCCCCGAAACCCAACGTCCCTCATTGTTTCAGTCGCT
GTTATATGAAGCGGTGGGAAGAACAGTGAACCCAGTGAGCGGCGCCGTGG
GGCTTCTGTGGACAGGAAACTGGAACGTGTGCCAGTCGGCGGTTGAGAGA
GTTCTCTGCGGCGGCGCGTTGCAGCCGCTGCCTTGCCCACTGGCGCCGGA
ACTTGATGACGTGTCAGAATCTGCCGTGAACTGTACCAACAATAGTCCAA
AGGACGTCATCACTCCGCCATCGAAGAGGAAGGCCGTTTCTGATTTTCAC
GATGATCTTCATCTGGGTCTGAAGCCTTGTTTGCCGGAGAAGCTTAGGGC
GGAGACGCCGTCGGAGGAGTCCGAAACGACGACGTCGGGAACCGGGTCTG
ATAATTGTTGCTCTGAGGTCGCAGGTGAAAAGAAGCTTTTGAGACTCTTC
CTCTGAAACAACAGACGAGTATTAA
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