CF834267
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834267 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.271e-49 Identity = 98/139 (70.50%), Postives = 111/139 (79.86%), Query Frame = 2 Query: 101 MSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPL---------APELDDVSESAVNCTN 490 MSCNGCRVLRKGCSENC+LR IQWI +P+AQ +ATVFVAKFFGRAGLMSFISAVPE+Q P+LFQSLLYEA GRTVNPV+GAVGLLWTGNWNVCQ+AVE VL GG+L+P+P L +P D+ SE N Sbjct: 1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEMLN 139
BLAST of CF834267 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 3.697e-49 Identity = 94/148 (63.51%), Postives = 111/148 (75.00%), Query Frame = 2 Query: 101 MSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPL-------------PCPLAPELDDVSESAVNCTNNSPKD 505 MSCNGCRVLRKGCSENC+LR IQWI T AQ +ATVFVAKFFGRAGLMSFISAVP++QRP+LFQSLLYEA GRTVNPV+GA+G+LWTGNWN+CQ+AVE VL GG+L+P+ P P + E ++ +N N D Sbjct: 1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEEASEICTEMLNLQQNDSTD 148
BLAST of CF834267 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.607e-44 Identity = 83/110 (75.45%), Postives = 98/110 (89.09%), Query Frame = 2 Query: 101 MSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPL 430 MSCNGCRVLRKGCSE C+LR +QWI + ++Q +ATVFVAKFFGRAGLMSFIS+VPE QRP+LFQSLL+EA GRTVNPV+GAVG+LWT NW+VCQ+AVE VL GG L+P+ Sbjct: 1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPI 110
BLAST of CF834267 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.557e-39 Identity = 71/117 (60.68%), Postives = 95/117 (81.20%), Query Frame = 2 Query: 95 INMSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 445 + MSCNGCRVLRKGCSENC +R +QWI + ++QANATVF+AKF+GRAGLM+ ++ P+ RP++F+SLLYEA GR VNP+ G+VGLLW+GNW++CQ+AVE V+ G + P+ C A Sbjct: 1 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAA 117
BLAST of CF834267 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 5.537e-37 Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 2 Query: 95 INMSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCG 412 + MSCNGCRVLRKGCSE+C +R + WI +P+AQANATVF+AKF+GRAGLM+ I+A P RP +F+SLL+EA GR VNP+ G+VGLLW+GNW +CQ AVE V+ G Sbjct: 1 MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106
BLAST of CF834267 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.038e-35 Identity = 66/117 (56.41%), Postives = 91/117 (77.78%), Query Frame = 2 Query: 95 INMSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 445 + +SCNGCRVLRKGC+++C +R +QWI + +QANAT+F+AKF+GRAGL++ I + P+ RP++F+SLLYEA GR VNPV G+VGL+W+GNW CQ+AV+ VL G + P P A Sbjct: 1 MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSA 117 The following BLAST results are available for this feature:
BLAST of CF834267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF834267 ID=CF834267; Name=CF834267; organism=Citrus sinensis; type=EST; length=725bpback to top |