CF834285

Overview
NameCF834285
Unique NameCF834285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6651 contig Csv1_Contig6651:110..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834285 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37
Identity = 72/159 (45.28%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  207 LSCLSWRLGVETNNVIGWATVPEKCAGYVGHYMLGQQYRMDSEVVANEAILYAQSLKLAGDGKNIWVFDIHETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDHRNVTEANLKHAGFDTWEKLILEGS 683
            L C +WR  VETNN+  W T+PE+CA YV  YM+G  Y+M+ + V++EA  YA+S+ L  DG+++W+FD+ ET LSNLPYY+ + +G++ ++   F++WV  G A                G K+  LTGR E HR+VT  NL +AGF  W KLIL GS
Sbjct:   41 LKCTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFHDWHKLILRGS 199          
BLAST of CF834285 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36
Identity = 74/159 (46.54%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  201 PGLSCLSWRLGVETNNVIGWATVPEKCAGYVGHYMLGQQYRMDSEVVANEAILYAQSLKLAGDGKNIWVFDIHETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDHRNVTEANLKHAGFDTWEKLILE 677
            P + C SWRL VE +N+ G+ T+PE+C      Y+ G+QYR DS+ V  +A  YA+ L++    K+ +VF I  T LSN+PYY K+G+GV+ +N TL++EWVN G A                G KI+FL+GR  D + VTEANLK AG+ TWEKLIL+
Sbjct:   38 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILK 194          
BLAST of CF834285 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36
Identity = 74/159 (46.54%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  201 PGLSCLSWRLGVETNNVIGWATVPEKCAGYVGHYMLGQQYRMDSEVVANEAILYAQSLKLAGDGKNIWVFDIHETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDHRNVTEANLKHAGFDTWEKLILE 677
            P + C SWRL VE +N+ G+ T+PE+C      Y+ G+QYR DS+ V  +A  YA+ L++    K+ +VF I  T LSN+PYY K+G+GV+ +N TL++EWVN G A                G KI+FL+GR  D + VTEANLK AG+ TWEKLIL+
Sbjct:   35 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILK 191          
BLAST of CF834285 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.096e-31
Identity = 72/166 (43.37%), Postives = 102/166 (61.45%), Query Frame = 3
Query:  180 GSRNNDVPGLSCLSWRLGVETNNVIGWATVPEKCAGYVGHYMLGQQYRMDSEVVANEAILYAQSLKLAGDGKNIWVFDIHETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDHRNVTEANLKHAGFDTWEKLILE 677
            G R+++V    C S+RL VE +N+  + T+PE+C      Y+ G+Q+R DS+ V  +A  YA   ++  +  +I++F I  T LSN+PYY K+G+GV+ +N TL++EWVN G A                G KIVFL+GR  D   VTEANLK AGF TWE+LIL+
Sbjct:   35 GERSSEV---KCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILK 195          
BLAST of CF834285 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.033e-26
Identity = 62/158 (39.24%), Postives = 91/158 (57.59%), Query Frame = 3
Query:  210 SCLSWRLGVETNNVIGWATVPEKCAGYVGHYML-GQQYRMDSEVVANEAILYAQSLKLAGDGKNIWVFDIHETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTG-KAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDHRNVTEANLKHAGFDTWEKLILE 677
            +C SW LGVET+N+I + TVP  C  YV  Y++  +QY+ DS+ V  EA  YA+ L L  D  N+W+FD+ +T LS++PYYAK G+G +  +P  +  W+ TG                   GI+ + L+ R +  +NVT  NL+ AG   W+ LIL+
Sbjct:   51 NCRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILSDRWKLWKNVTLDNLEAAGVTYWKHLILK 208          
BLAST of CF834285 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 73/211 (34.60%), Postives = 107/211 (50.71%), Query Frame = 3
Query:   78 SMDIRHLFLATISATSHGFSMDIPHQIHLLRPKAGSRNN----DVPGLS-----CLSWRLGVETNNVIGWATVPEKCAGYVGHYML-GQQYRMDSEVVANEAILYAQSLKLAGDGKNIWVFDIHETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKA-XXXXXXXXXXXXXXXXGIKIVFLTGRPEDHRNVTEANLKHAGFDTWEKLILE 677
            S+ +  L  AT+S      S  +P  I LL       N     +  GLS     C SW LGVET+N+I + TVP  C  YV  Y++  +QY+ DS+ V  EA  YA+ L L  D  N+W+FD+ +T LS++PYYAK G+G +   P  +  W+ +G++                 GI+ + ++ R +    VT  NLK  G   W+ LIL+
Sbjct:    5 SLSLLLLLAATVSHVQS--SASVPGLIELLESNTIFGNEAELLEKEGLSINYPNCRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLELGIEPIIISDRWKKLSEVTVENLKAVGVTKWKHLILK 213          
The following BLAST results are available for this feature:
BLAST of CF834285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC2.977e-3745.28Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPA_SOYBN5.615e-3646.54Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN5.615e-3646.54Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSPB_SOYBN1.096e-3143.37Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
VSP2_ARATH4.033e-2639.24Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH1.174e-2534.60Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05E04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834285 ID=CF834285; Name=CF834285; organism=Citrus sinensis; type=EST; length=691bp
TAATGAGCATGCGATGGGAGTCACTGCCATTATTCTTCTTTTTTCTGGCT
ACCCTATCAGCAACATCCCATGGATTTAGCATGGACATCCGCCATCTTTT
TCTGGCTACCATATCAGCAACATCCCATGGATTTAGCATGGACATCCCCC
ATCAGATTCATCTTCTCCGACCGAAAGCCGGTTCCCGGAACAACGATGTT
CCCGGCTTGTCCTGCCTGAGTTGGCGACTCGGAGTGGAAACTAATAACGT
TATAGGATGGGCGACTGTTCCCGAAAAATGTGCAGGCTACGTGGGGCATT
ACATGTTAGGCCAGCAGTACCGCATGGACTCTGAAGTGGTAGCTAATGAG
GCCATTCTCTATGCGCAGAGCCTCAAGCTTGCTGGCGACGGCAAGAACAT
TTGGGTTTTCGACATACATGAAACCTCGCTATCTAATTTGCCATATTATG
CTAAGAATGGATTCGGGGTGAAGCCATACAACCCTACTTTGTTTAATGAA
TGGGTGAACACCGGAAAAGCACCACCGCTGCCAGAGAGCCTTAAGCTTTA
CAAAAAATTATTATTGCTTGGAATTAAGATTGTATTCCTCACGGGAAGAC
CAGAAGATCACAGAAATGTTACAGAAGCTAATTTAAAGCATGCTGGATTC
GACACCTGGGAGAAGCTCATCCTCGAGGGATCATCTCACTC
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