CF834288

Overview
NameCF834288
Unique NameCF834288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1065 contig Csv1_Contig1065:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834288 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.791e-47
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = -1
Query:  220 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLGTISRTGIMEKNDLSPAVREDSGASYAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 510
            MARSLFKAKLLLAPVADGISLSI RRGYAAAAPLGTISRTGIMEKNDL PAVREDSGAS AWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of CF834288 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = -1
Query:  223 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLSPAVREDSGA-----SYAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 510
            MARS+   KLL A + DG+ +SI RRGY+ A P     +  R G M K +   A++E S +     S AWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CF834288 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 52/104 (50.00%), Postives = 66/104 (63.46%), Query Frame = -1
Query:  223 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLSPAVREDSGA-----SYAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 510
            MARS+   K L A V D + +SI RRGY+ A P     +  R G M K +   A++E S +     S AWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of CF834288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI9.791e-4796.91Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.574e-2052.88Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.128e-1850.00Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05E07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834288 ID=CF834288; Name=CF834288; organism=Citrus sinensis; type=EST; length=708bp
TTTTTTTTAATTTTGCATACAGGCATTCTTTACTTTTATTGACACCCTTT
AAGAGACAAAATCATGGAAATGCACTATTAAAAGTCCCCTATAACAGTTG
ATATCAAAACAACAGCAAAGACTTTAGAGTGAGTCAAAATTGCTACTGTA
ACAACATCACTTAAAAGTTAAAGCACCGCTAACAGCAAAGGATCTGCTGC
TATGCGCGACCACTCCCTAGTGTGCCCTGACTTTGTGGTTCAACAGCATC
TCTCGAAGCTCTGCTGGATCAATCTCGACCGCCCGATTCTCCGGCCTGTA
GTACCCAGTGATGGGATCTGGGGCCCAGGCATAAGAGGCCCCAGAATCCT
CTCTCACCGCAGGCGACAAATCATTTTTCTCCATGATACCAGTCCGAGAT
ATGGTTCCCAAGGGTGCTGCTGCAGCATATCCTCTCCTGCCAATGGAGAG
CGAGATGCCATCAGCAACAGGAGCAAGAAGAAGCTTAGCTTTGAAGAGAG
AGCGGGCCATTGTTTTATTTACTTATAGAACTTAATAGATATGAACATAG
CTAGCTGGGATGTTTCTGTACAGTGCTACTACAGAAGAAGAAAGATTCTG
CTCCTGCAGTAGCTATAGGCAAAAGCCTAGCGGCTCGCTCTCTTTGTGCT
GTGCTTGTGACGAAGAAGGCTTTAGGGTTTTCTGTTATTTTATAAAAAGA
GAGGACAA
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