CF834289

Overview
NameCF834289
Unique NameCF834289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5271 contig Csv1_Contig5271:206..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834289 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.121e-45
Identity = 92/97 (94.85%), Postives = 93/97 (95.88%), Query Frame = 1
Query:  199 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAKLLEMLLNHKGRAH 489
            MARSLFKAKLLLAPVADGISLSI RRGYAAAAPLGTISRTGIMEKNDL PAVREDSGASSAWAPDPITGYYRPENRAVEIDPA+L EMLLNHK RAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of CF834289 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.802e-19
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  199 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAKLLEMLLNHKGRA 486
            MARS+   KLL A + DG+ +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID A+L EMLLNH+ R+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CF834289 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.889e-18
Identity = 51/104 (49.04%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  199 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAKLLEMLLNHKGRA 486
            MARS+   K L A V D + +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID A L EM+LNH+ R+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of CF834289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI1.121e-4594.85Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.802e-1950.96Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI9.889e-1849.04Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05E07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834289 ID=CF834289; Name=CF834289; organism=Citrus sinensis; type=EST; length=494bp
TTTCTCCTCTCTCTTTAAAAATAACAGAAAACCCTAAAGCCTTCTTCCTC
ACCCTTACAGCACAAAGAGAGCGAGCCGCTAACTTTTGCCTATAGCTACT
GCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAACATCC
CAGCTAGCTATCTTCAGTATCTATTAAGTTCTATAAGTAAATAAAACAAT
GGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTGACG
GCATCTCGCTCTCCATTGGCAGGAGAGGATATGCTGCAGCAGCACCCTTG
GGAACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGACGCCTGC
GGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCATCA
CTGGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGCAAAG
CTTCTAGAGATGCTGCTGAACCACAAAGGCAGGGCACACTAGGG
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