CF834420

Overview
NameCF834420
Unique NameCF834420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8638 contig Csv1_Contig8638:439..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALA2_PANMI (Alanine aminotransferase 2 OS=Panicum miliaceum PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.631e-39
Identity = 78/137 (56.93%), Postives = 96/137 (70.07%), Query Frame = -1
Query:  229 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED 639
            ++NP K GD SY  +  E  GIL+SL RRA+ + D FN+   + CN  EGAMY FPQI LP KAIEAAK A K PD FY LRLLE+TGI  VPGSGFGQ  G +H+R TILP E+ +PA++  FK F++ FM +Y D
Sbjct:  346 VMNPPKVGDESYAAYKAEKDGILQSLARRAKALEDAFNNLEGISCNKAEGAMYLFPQIHLPKKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHIRCTILPQEDKIPAVITRFKAFHEAFMAEYRD 482          
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALA2_HORVU (Alanine aminotransferase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.574e-37
Identity = 75/137 (54.74%), Postives = 90/137 (65.69%), Query Frame = -1
Query:  229 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED 639
            ++NP K  D SY  +  E  GIL SL RRA+ +   FN    + CN  EGAMY FPQI LP KAIEAAK A K PD FY LRLLE+TGI  VPGSGFGQ  G +H R TILP E+ +PA++  F  F++ FM +Y D
Sbjct:  346 VMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEYRD 482          
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALAM_DICDI (Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.094e-35
Identity = 68/136 (50.00%), Postives = 95/136 (69.85%), Query Frame = -1
Query:  232 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYE 639
            MV P   G+ S++ +++E   I ESL++RA ++T+  N+   V CN +EGAMY+FPQIRLP KA+E A   GK PD +YC++LLEATGI  VPGSGFGQK+G +H RTT LP+EE +  + +    F+  FM +Y+
Sbjct:  399 MVRPPVAGEQSHDLYLKERDNIYESLKKRANLLTNALNNLEGVTCNPSEGAMYAFPQIRLPAKAVEYANSIGKAPDAYYCIQLLEATGICVVPGSGFGQKDGTWHFRTTFLPSEEAIEGVCKRIADFHQSFMNKYK 534          
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALAT2_XENLA (Alanine aminotransferase 2 OS=Xenopus laevis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.579e-34
Identity = 64/135 (47.41%), Postives = 95/135 (70.37%), Query Frame = -1
Query:  235 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 639
            +VNP KPG+ SY+QF+ E + +L +L  +AR+  +  N    + CN  +GAMYSFP+I +P KAI+ A+  G+ PD+F+C++LLE TGI  VPGSGFGQ+EG  H R TILP  + + +++E  K F+ +FM++Y
Sbjct:  405 IVNPPKPGEPSYKQFISEKQAVLNNLAEKARLTEEILNQAPGIRCNPVQGAMYSFPRIHIPEKAIKLAQAEGQAPDMFFCMKLLEETGICVVPGSGFGQREGTHHFRMTILPPTDKLKSLLERLKDFHQKFMDEY 539          
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALAT2_MOUSE (Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.024e-33
Identity = 65/135 (48.15%), Postives = 95/135 (70.37%), Query Frame = -1
Query:  235 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 639
            +VNP +PG+ S+EQF RE + +L +L ++A++  D FN    + CN  +GAMY+FP+I +P KA+EAA+     PD+FYC++LLE TGI  VPGSGFGQ+EG +H R TILP  + +  ++   K F+ +F+EQY
Sbjct:  387 VVNPPEPGEESFEQFSREKEFVLGNLAKKAKLTEDLFNQVPGIQCNPLQGAMYAFPRILIPAKAVEAAQSHKMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVDKLKTVLHKVKDFHLKFLEQY 521          
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALAT2_XENTR (Alanine aminotransferase 2 OS=Xenopus tropicalis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.337e-33
Identity = 64/135 (47.41%), Postives = 94/135 (69.63%), Query Frame = -1
Query:  235 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 639
            +VNP KPG+ SY+QF+ E + +L +L  +AR+  +  N    + CN  +GAMYSFP+I +P KAI+ A+  G+ PD+F+C++LLE TGI  VPGSGFGQ+EG  H R TILP  + + +++E  K F+ +F E+Y
Sbjct:  389 IVNPPKPGEPSYKQFMAEKQAVLGNLAEKARLTEEILNQSPGIRCNPVQGAMYSFPRIHIPEKAIKLAQAEGQAPDMFFCMKLLEETGICVVPGSGFGQREGTHHFRMTILPPTDKLKSLLERLKDFHQKFTEEY 523          
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALAT2_HUMAN (Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.132e-32
Identity = 64/135 (47.41%), Postives = 93/135 (68.89%), Query Frame = -1
Query:  235 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 639
            +VNP   G+ S+EQF RE + +L +L ++A++  D FN    + CN  +GAMY+FP+I +P KA+EAA+     PD+FYC++LLE TGI  VPGSGFGQ+EG +H R TILP  E +  +++  K F+  F+E+Y
Sbjct:  388 VVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLEKY 522          
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALAT2_DANRE (Alanine aminotransferase 2-like OS=Danio rerio GN=gpt2l PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.581e-32
Identity = 61/135 (45.19%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  235 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 639
            +VNP +PG+ S++ F++E   +L +L  +A++     N+   + CN  +GAMYSFP+I LP +AI  AK  G+ PD+FYC++LLE TGI  VPGSGFGQ+EG +H R TILP  + +  ++   K F+  F +QY
Sbjct:  414 VVNPPQPGEPSHQTFMQERTAVLSALAEKAKLTEQILNTVPGISCNPVQGAMYSFPRITLPERAISEAKAKGQAPDMFYCMKLLEETGICLVPGSGFGQREGTYHFRMTILPPTDKLKLMLNKLKDFHQRFTQQY 548          
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALAT1_HUMAN (Alanine aminotransferase 1 OS=Homo sapiens GN=GPT PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.251e-31
Identity = 62/135 (45.93%), Postives = 89/135 (65.93%), Query Frame = -1
Query:  235 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 639
            +V+P  P D S+ QF  E + +L  L  +A++    FN    + CN  +GAMYSFP+++LPP+A+E A+  G  PD+F+CLRLLE TGI  VPGSGFGQ+EG +H R TILP  E +  ++E   +F+ +F  +Y
Sbjct:  361 VVSPPAPTDPSFAQFQAEKQAVLAELAAKAKLTEQVFNEAPGISCNPVQGAMYSFPRVQLPPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPLEKLRLLLEKLSRFHAKFTLEY 495          
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALAT1_BOVIN (Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.641e-31
Identity = 60/134 (44.78%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  235 VNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 636
            V+P  P D S+ +F  E + +L  L  +A++    FN    + CN  +GAMYSFP+++LPP+A++ A+  G  PD+F+CLRLLE TGI  VPGSGFGQ+EG +H R TILP  E +  ++E   +F+ +F  +Y
Sbjct:  362 VSPPAPSDPSFPRFQAERRAVLAELAAKAKLTEQVFNEAPGIRCNPVQGAMYSFPRVQLPPRAVQRAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPMEKLRPLLEKLSQFHAKFTREY 495          
The following BLAST results are available for this feature:
BLAST of CF834420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ALA2_PANMI1.631e-3956.93Alanine aminotransferase 2 OS=Panicum miliaceum PE... [more]
ALA2_HORVU7.574e-3754.74Alanine aminotransferase 2 OS=Hordeum vulgare PE=2... [more]
ALAM_DICDI1.094e-3550.00Probable alanine aminotransferase, mitochondrial O... [more]
ALAT2_XENLA1.579e-3447.41Alanine aminotransferase 2 OS=Xenopus laevis GN=gp... [more]
ALAT2_MOUSE1.024e-3348.15Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2... [more]
ALAT2_XENTR1.337e-3347.41Alanine aminotransferase 2 OS=Xenopus tropicalis G... [more]
ALAT2_HUMAN1.132e-3247.41Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2... [more]
ALAT2_DANRE9.581e-3245.19Alanine aminotransferase 2-like OS=Danio rerio GN=... [more]
ALAT1_HUMAN1.251e-3145.93Alanine aminotransferase 1 OS=Homo sapiens GN=GPT ... [more]
ALAT1_BOVIN3.641e-3144.78Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05H24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834420 ID=CF834420; Name=CF834420; organism=Citrus sinensis; type=EST; length=639bp
GTTTTTTTTTTCTTTTTTTCATAATTCATAGAGAATATTTATAAGGGATG
AAACAGGAATCAAACAGAGATAATATGGGCAATCTTCAAGCGACTGAAGT
TTTTCCTACTAAAAAGGGGTTAGGACGAAAGTAGGGAGCATATATCGATG
GCTTTCTATAGCCTTTGAATAATATAATACAAATTTTGGGAATTTGGACG
TCCCTTACATTCTTGAATAGCCCCTGTAGTCTTCATATTGCTCCATGAAC
TCATCATTGAACTTCTTGAAACTCTCCATGATTGCTGGCATGTCCTCCTC
AGCCGGTAAAATTGTTGTCCTTAAATGGAAGACCCCTTCTTTCTGTCCAA
ATCCAGAACCAGGGACAGTAAAAATGCCAGTGGCTTCCAAAAGCCGGAGA
CAGTAAAAAACATCAGGAACTTTTCCTGCCCTCTTAGCAGCCTCTATTGC
TTTTGGAGGTAGGCGTATTTGAGGGAATGAATACATGGCACCTTCCGTGA
AATTGCAAACCACATTTCTGCAACTGTTGAATCCATCAGTCATCATTCTT
GCTCTTCTCCTCAGTGATTCAAGGATCCCTTTACTTTCCCTAACAAACTG
TTCATATGAAATATCTCCAGGCTTGAGCGGGTTAACCAT
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