CF834423

Overview
NameCF834423
Unique NameCF834423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:354..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_ARATH (Elongation factor Tu, chloroplastic OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.258e-46
Identity = 92/114 (80.70%), Postives = 103/114 (90.35%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            YE+  +VD YIPIPQRQT+LPFLLAVE VFSITGRGTVATGRVERGT+KVG+TVDLVGL+ETR++TVTGVEMFQK L EA+AGDNVGLLL G+Q ADI RGMVLA PG+ITP T
Sbjct:  267 YELMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRETRSYTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHT 380
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU1_SOYBN (Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.258e-46
Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            +++   VD YIPIPQRQTDLPFLLAVE VFSITGRGTVATGRVERGTIKVG+TVDLVGL+ETRN TVTGVEMFQK L EA+AGDNVGLLL GVQ  DI RGMVLA PGTITP T
Sbjct:  270 FQLMDEVDNYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKTDIQRGMVLAKPGTITPHT 383
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTUB_NICSY (Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.337e-44
Identity = 89/114 (78.07%), Postives = 100/114 (87.72%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            Y++  +VD YIPIPQRQT+LPFL+A+E VFSITGRGTVATGRVERGT+KVG+ VD+VGLK+TRN TVTGVEMFQK L EAMAGDNVGLLL G+Q  DI RGMVLA PGTITP T
Sbjct:  276 YQLMDNVDEYIPIPQRQTELPFLMAIEDVFSITGRGTVATGRVERGTVKVGEIVDIVGLKDTRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHT 389
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU2_SOYBN (Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.746e-44
Identity = 89/114 (78.07%), Postives = 101/114 (88.60%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            YE+  +VD YIPIPQRQT+LPFLLA+E VF+ITGRGTVATGRVERGTI+VG+TVD+VG+K+TRN TVTGVEMFQK L EA+AGDNVGLLL G+Q  DI RGMVLA PGTITP T
Sbjct:  270 YELMEAVDDYIPIPQRQTELPFLLAIEDVFTITGRGTVATGRVERGTIRVGETVDIVGVKDTRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLAKPGTITPHT 383
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_TOBAC (Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.930e-43
Identity = 87/114 (76.32%), Postives = 99/114 (86.84%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            YE+  +VD YIPIP RQT+LPFL+A+E VFSITGRGTVATGRVERGT+++G TVD+VGLK+TR+ TVTGVEMFQK L EAMAGDNVGLLL G+Q  DI RGMVLA PGTITP T
Sbjct:  269 YELMDAVDSYIPIPVRQTELPFLMAIEDVFSITGRGTVATGRVERGTVRIGDTVDIVGLKDTRSTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHT 382
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTUA_NICSY (Elongation factor TuA, chloroplastic OS=Nicotiana sylvestris GN=TUFA PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 1.930e-43
Identity = 87/114 (76.32%), Postives = 99/114 (86.84%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            YE+  +VD YIPIP RQT+LPFL+A+E VFSITGRGTVATGRVERGT+++G TVD+VGLK+TR+ TVTGVEMFQK L EAMAGDNVGLLL G+Q  DI RGMVLA PGTITP T
Sbjct:  269 YELMDAVDSYIPIPVRQTELPFLMAIEDVFSITGRGTVATGRVERGTVRIGDTVDIVGLKDTRSTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHT 382
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_PEA (Elongation factor Tu, chloroplastic OS=Pisum sativum GN=tufA PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.251e-42
Identity = 86/114 (75.44%), Postives = 97/114 (85.09%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            Y++   VD+YIPIPQRQT+LPFLLA+E VFSIT RGTVATGR+ERG +KVG  VDLVGL+ETRN TVTGVEMFQK L +AMAGDNVGLLL G+Q  DI RGMVLA PGTITP +
Sbjct:  279 YQLMDEVDKYIPIPQRQTELPFLLAIEDVFSITXRGTVATGRIERGLVKVGDVVDLVGLRETRNTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHS 392
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_LEPTE (Elongation factor Tu, chloroplastic OS=Leptosira terrestris GN=tufA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.295e-39
Identity = 78/114 (68.42%), Postives = 98/114 (85.96%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            +++  +VD YIP P+R T+ PFL+AVE VFSITGRGTVATGRVERG++KVG+T+++VGL+ETR  TVTG+EMFQKTL E++AGDNVG+LL G+Q  DI RGMVLA PG+ITP T
Sbjct:  200 FKLMDTVDAYIPTPERDTEKPFLMAVEDVFSITGRGTVATGRVERGSVKVGETIEIVGLRETRTTTVTGLEMFQKTLEESVAGDNVGVLLRGIQKIDIQRGMVLAKPGSITPHT 313
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_GUITH (Elongation factor Tu, chloroplastic OS=Guillardia theta GN=tufA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.295e-39
Identity = 77/114 (67.54%), Postives = 96/114 (84.21%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            Y++   VD YIP P+R+TD  FL+AVE VFSITGRGTVATGR+ERG +KVG T+++VGL+ETRN T+TG+EMFQK+L EA+AGDNVG+L+ G+Q  DI RGMVLA PG+ITP T
Sbjct:  199 YQLMDKVDEYIPTPERETDKAFLMAVEDVFSITGRGTVATGRIERGKVKVGDTIEIVGLRETRNTTITGLEMFQKSLDEALAGDNVGILVRGIQKTDIERGMVLAAPGSITPHT 312
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_ACAM1 (Elongation factor Tu OS=Acaryochloris marina (strain MBIC 11017) GN=tuf PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.691e-39
Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            Y++   VD YIP P+R  D PFL+AVE VFSITGRGTVATGR+ERG + VG+TV+LVG+++TR+ TVTGVEMFQKTL E MAGDNVGLLL GVQ  DI RGMVLA PG+ITP T
Sbjct:  200 YKLMEEVDAYIPTPERDVDKPFLMAVEDVFSITGRGTVATGRIERGKVVVGETVELVGIRDTRSTTVTGVEMFQKTLDEGMAGDNVGLLLRGVQKEDIERGMVLAKPGSITPHT 313
The following BLAST results are available for this feature:
BLAST of CF834423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_ARATH9.258e-4680.70Elongation factor Tu, chloroplastic OS=Arabidopsis... [more]
EFTU1_SOYBN9.258e-4682.46Elongation factor Tu, chloroplastic OS=Glycine max... [more]
EFTUB_NICSY1.337e-4478.07Elongation factor TuB, chloroplastic OS=Nicotiana ... [more]
EFTU2_SOYBN1.746e-4478.07Elongation factor Tu, chloroplastic OS=Glycine max... [more]
EFTU_TOBAC1.930e-4376.32Elongation factor Tu, chloroplastic OS=Nicotiana t... [more]
EFTUA_NICSY1.930e-4376.32Elongation factor TuA, chloroplastic OS=Nicotiana ... [more]
EFTU_PEA1.251e-4275.44Elongation factor Tu, chloroplastic OS=Pisum sativ... [more]
EFTU_LEPTE1.295e-3968.42Elongation factor Tu, chloroplastic OS=Leptosira t... [more]
EFTU_GUITH1.295e-3967.54Elongation factor Tu, chloroplastic OS=Guillardia ... [more]
EFTU_ACAM11.691e-3971.05Elongation factor Tu OS=Acaryochloris marina (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05I03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834423 ID=CF834423; Name=CF834423; organism=Citrus sinensis; type=EST; length=345bp
TTATGAGATTACCCCTTCTGTTGATAGATACATTCCTATCCCACAAAGAC
AAACTGATTTGCCCTTTTTGTTAGCTGTTGAATATGTGTTTTCAATTACT
GGTCGTGGTACTGTGGCCACTGGCCGTGTTGAGAGAGGCACTATTAAGGT
TGGACAGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTG
TAACTGGGGTTGAAATGTTTCAAAAGACTCTATACGAGGCAATGGCTGGG
GATAATGTCGGGTTGTTACTTACAGGTGTACAATAGGCTGATATTCTGAG
AGGGATGGTGTTGGCCTAGCCCGGAACAATTACTCCCCGTACTAA
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