CF834516

Overview
NameCF834516
Unique NameCF834516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834516 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = -3
Query:  304 VTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 522
            V V+PNPDEVAE KYVNREQLKELL+KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMK+IHKL
Sbjct:  214 VAVHPNPDEVAEIKYVNREQLKELLKKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKSIHKL 286          
BLAST of CF834516 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = -3
Query:  304 VTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 522
            V VNPNPDEVA+ KYV R+QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDH+EKGT++E  DMK+IHKL
Sbjct:  162 VNVNPNPDEVADIKYVTRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTMHEAADMKSIHKL 234          
BLAST of CF834516 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.177e-31
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = -3
Query:  304 VTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 522
            V ++PNPDEVA+ KYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMKTIH L
Sbjct:  218 VGIHPNPDEVADIKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKTIHNL 290          
BLAST of CF834516 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.849e-31
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = -3
Query:  301 VTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 522
            V V+PNPDEVA+ KYVN++QLK+LLRK DAGEEGLKLSPWFRLVV+NFLFKWWDH+EKGTL +  DMKTIHKLT
Sbjct:  236 VNVHPNPDEVADVKYVNQDQLKDLLRKVDAGEEGLKLSPWFRLVVENFLFKWWDHVEKGTLQDATDMKTIHKLT 309          
BLAST of CF834516 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = -3
Query:  304 VTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 522
            V V PNPDEVAE KYV+RE+LKEL++KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL E IDMKTIHKL
Sbjct:  212 VKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSPWFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284          
BLAST of CF834516 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.560e-29
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = -3
Query:  304 VTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 522
            V ++PNPDEVAE KY+NR+ LKELLRKADA EEG+KLSPWFRLVVDNFLFKWWDH+EKG+L +  DMKTIHKL
Sbjct:  215 VNLDPNPDEVAEVKYMNRDDLKELLRKADAEEEGVKLSPWFRLVVDNFLFKWWDHVEKGSLKDAADMKTIHKL 287          
BLAST of CF834516 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.011e-28
Identity = 56/73 (76.71%), Postives = 65/73 (89.04%), Query Frame = -3
Query:  304 VTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 522
            V + PNPDEVAE KYV+RE+LKEL++KADAG+E +KLSPWFRLVVDNFL KWWDH+EKGT+ E  DMKTIHKL
Sbjct:  161 VKLQPNPDEVAEIKYVSREELKELVKKADAGDEAVKLSPWFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 233          
BLAST of CF834516 vs. ExPASy Swiss-Prot
Match: IDI1_MESAU (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.160e-16
Identity = 37/74 (50.00%), Postives = 60/74 (81.08%), Query Frame = -3
Query:  304 HVTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 525
            +VT+NP+P+E+  Y YV++E+LKEL++KA +GE  +KL+PWF+++VD FLFKWWD+L    L++ +D + IH++
Sbjct:  158 NVTLNPDPNEIKSYCYVSKEELKELVKKAASGE--VKLTPWFKIIVDTFLFKWWDNLNH--LSQFVDHEKIHRM 227          
BLAST of CF834516 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 35/74 (47.30%), Postives = 59/74 (79.73%), Query Frame = -3
Query:  304 HVTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 525
            +VT+NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++ + FLFKWWD+L    LN+ +D + I+++
Sbjct:  158 NVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAETFLFKWWDNLNH--LNQFVDHEKIYRI 227          
BLAST of CF834516 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 35/74 (47.30%), Postives = 58/74 (78.38%), Query Frame = -3
Query:  304 HVTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 525
            +VT+NP+P+E+  Y YV++E+++E+L+KA +GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH+L
Sbjct:  158 NVTLNPDPNEIKSYCYVSKEEVREILKKAASGE--IKLTPWFKIIADTFLFKWWDNLNH--LSPFVDHEKIHRL 227          
The following BLAST results are available for this feature:
BLAST of CF834516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
IDI2_CLABR7.482e-3286.30Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI1_CAMAC7.482e-3284.93Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI2_CLAXA2.177e-3184.93Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CAMAC4.849e-3181.08Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI2_ARATH6.334e-3184.93Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI1_CLABR1.560e-2979.45Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI1_ARATH1.011e-2876.71Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI1_MESAU1.160e-1650.00Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesoc... [more]
IDI1_PONAB7.516e-1647.30Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_MOUSE1.282e-1547.30Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834516 ID=CF834516; Name=CF834516; organism=Citrus sinensis; type=EST; length=647bp
TTTTTTTTTTTCCTTAAGAAGCAGATTTTTATTTTTTTACTAAACCATAT
GCCATGTCAAAATTACAAACTTAACAATAAAATTCCATAAAAGCAGCACA
TACGAAAAGATAAGGTAACGTCAACAACAAAATGCTAATCTGTGTAGAAC
TCTCGCATATCCAAATTTATTGGAATAAAGAAACCGGTGAGAAGATACTG
TGTACCCTTAATGTCTTGAAGAACTCTCAAATGCCCAAACTTATTGGAAT
ACAGGTTCCGGCACACAAATACTGTGTTTCAAGGGCCTGCGGCTTTATTA
AGTCAACTTGTGAATGGTCTTCATGTCAATGACTTCGTTAAGGGTACCTT
TTTCGAGGTGATCCCACCACTTGAACAAGAAATTGTCCACAACCAGTCTG
AACCAAGGAGACAGCTTCAAACCTTCTTCTCCAGCATCTGCTTTCCTCAA
AAGCTCTTTTAACTGTTCCCGGTTGACATATTTATACTCGGCTACTTCAT
CAGGATTTGGGTTAACAGTGACGTGCAGAGCTTCGTGAGTTTGTTGAGGG
AGAAGGTGAAAAGTGAAGAACCGGAGGAAGTGGAACCGGGCATTGGGGAG
GACCAATCACCTGCCGCCACGAAGCGGATTTGTGCTGAATCTCGGCC
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