CF834519

Overview
NameCF834519
Unique NameCF834519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1075 contig Csv1_Contig1075:1..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834519 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:  589 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 753
            SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
[Close]
BLAST of CF834519 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:  589 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 753
            SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
[Close]
BLAST of CF834519 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:  589 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 753
            SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
[Close]
BLAST of CF834519 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:  589 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 753
            SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
[Close]
BLAST of CF834519 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:  589 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 753
            SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
[Close]
BLAST of CF834519 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:  589 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 753
            SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
[Close]
BLAST of CF834519 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:  589 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 753
            SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
[Close]
BLAST of CF834519 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:  589 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 753
            SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
[Close]
BLAST of CF834519 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:  589 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 753
            SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
[Close]
BLAST of CF834519 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:  589 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 753
            SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
The following BLAST results are available for this feature:
BLAST of CF834519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
UBIQ_WHEAT7.573e-24100.00Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN7.573e-24100.00Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU7.573e-24100.00Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC7.573e-24100.00Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR7.573e-24100.00Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA7.573e-24100.00Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ7.573e-24100.00Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY7.573e-24100.00Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE7.573e-24100.00Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO7.573e-24100.00Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834519 ID=CF834519; Name=CF834519; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTTTTTTTTAAGAAAAAAAAGTCTTTTATTTATGCTGATACCCTAT
TCTAATTTCAAGGGTCACTGTTTACCAACTGAGTTTCATCAGCTTCCACT
CCAGATTCTTGATATGCCATTCTAATTTCAGGTGTCATTATTTACCAATT
GAGTTTCACCAGCTTCCACTCCAGATTATTCACCGACACACCAACTTCAT
CTAAAGAAAAACCCCCAGTTGAGAGACTGGTATTAGGGTATTCAATCCCA
TTGGCACCTACGATCTTCCAGCCCATGTCAAACTGATAGGCTATTGGCTC
GAAGCCACAGCACTCCACAACAGCTAGTGTTGACTCACCTCCAACATAAG
GCACGCCAAAGCATCCAGAGGCCAGGCCTATAGTCCCTCTCCGAGAGCAG
TCATTACACTGAAGTGAAACCTTGGATCCAACGAAAAGAGGGATCCATTT
GCTGTGCTCCAAACGGCAGCCCTCTGCGGTGCACTTGAACTTCAGCCAGT
ACGGGAATTCCGTATCCTCAAAACCTGGTTCCATTCTCGCAACTTTTTCA
AGTTGAGCGGAAATTTTCAGAGAAAAGCGCTCGACTCCTCATCGGACACC
ATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGA
CCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCC
TAGCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGT
CTC
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