CF834522

Overview
NameCF834522
Unique NameCF834522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF834522 vs. ExPASy Swiss-Prot
Match: ERC6L_BOVIN (DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.825e-11
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = -3 
Query:  555 KQIFKGGLFK-TPPEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 809
            +Q+FK  L + T  + K   RYFS+Q+LREL ++  + F  S TQ QL   H  Q   D++L+ HI FL +L IAG+S H L++++
Sbjct:  599 RQVFKDSLIRQTTGDKKNPFRYFSKQELRELFTI--EDFQNSATQLQLQSLHAAQRRSDKNLDEHIAFLHSLRIAGISDHDLMYTR 682
[Close]
BLAST of CF834522 vs. ExPASy Swiss-Prot
Match: ERC6L_HUMAN (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.230e-11
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = -3 
Query:  558 KQIFKGGLFK-TPPEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFS 809
            +Q+FK  L + T  E K   RYFS+Q+LREL ++  +    S+TQ QL   H  Q   D  L+ HI +L +LGIAG+S H L+++
Sbjct:  597 RQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTI--EDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSLGIAGISDHDLMYT 679
The following BLAST results are available for this feature:
BLAST of CF834522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ERC6L_BOVIN4.825e-1141.86DNA excision repair protein ERCC-6-like OS=Bos tau... [more]
ERC6L_HUMAN8.230e-1142.35DNA excision repair protein ERCC-6-like OS=Homo sa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834522 ID=CF834522; Name=CF834522; organism=Citrus sinensis; type=EST; length=811bp
TTTTTTTTTTTTTTTTTCTCAAACGTATTCTCATTTCACTAAGTGACCTC
TTAACTGGAATTAGAAAGACAATCTCATATACAACAGCACTTGTGCACAA
ACATGCCAAAATTCTCAGACTACCATTTTTCCTAAGTTCAAAATTGCTGA
GTCAAAAAAAGCCCTCGTTGGAGTTTCCCAGTAACATCATCCAAATCAAT
GACTCCTGGCTCAGTTCTTTTCTCCATCTTAATCTTGTTAAGCTCTGAAT
TTAGTTCAGCAATCTGCTTCTGTAATTTTGCTCCCTTGTCTGGTAATCTC
TCTACGGTAACCTTGTTTGATATAAGTTGTGACAGCCTTTTAATTCTTTC
CTTGATATCAGACTCTTTCAATTTAGCTTCAGTTATTGGGGAAGAAGATT
TTTTGTTCAGTTTTATGTCTCTAGGATTGAACGCATACTCAGCCCCATCG
ACGTTTCGTGCAACCAGGTAGCTAGATGACAAATTACCAACAAATGCAGT
TCCTTTTCTCCTTGTCACTTCCTCTTCTTCCTGCACTACTTGCACTCGTG
CTGTCTTGGAGAAGAGTAAACTGTGATGACTGACTCCTGCTATACCTAGT
GTGTCAAGGAACTGTATGTGGGCTTCCAAGGACTCATCCATGTTGTGCTG
GTCCCCATGCTCTTCATGTAATTGCTGCTGGGTGAGAGAAACATCAAACC
CCTGTTTGGGTAGACTGAGAAGTTCCCGAAGATCCTGCTGGCTAAAATAC
CGAATCTGTTCTTTGTGCTCAGGGGGTGTCTTAAACAATCCGCCTTTGAA
TATCTGCTTTC
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